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OP596613.1__WAX24328.1__X__00015
Bact-VirOP596613.1__WAX24328.1__X__00015
Identity
- Accession:
- OP596613 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Taxonomy
TaxID: 3003363
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 86-152
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j7xC01 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.80 | 54.0 | 4.20e-01 | 70.1% | 36.4% |
| 1h8mA00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.76 | 52.0 | 4.08e-01 | 71.6% | 38.6% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.71 | 48.0 | 4.08e-01 | 70.1% | 55.0% |
| 7q04F01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.67 | 50.0 | 4.21e-01 | 79.1% | 72.5% |
| 6klsA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.67 | 45.0 | 4.04e-01 | 70.1% | 68.1% |
| 1rieA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.67 | 50.0 | 4.03e-01 | 79.1% | 74.0% |
| 2e4qA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.67 | 50.0 | 4.28e-01 | 80.6% | 61.1% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.66 | 45.0 | 3.78e-01 | 70.1% | 55.3% |
| 3bn8A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.66 | 45.0 | 3.71e-01 | 70.1% | 50.0% |
| 1i1nA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 52.0 | 3.57e-01 | 86.6% | 56.2% |
| 7ylsB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.65 | 48.0 | 4.10e-01 | 79.1% | 62.0% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.65 | 48.0 | 4.09e-01 | 79.1% | 59.8% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.64 | 49.0 | 3.91e-01 | 80.6% | 50.8% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.64 | 49.0 | 4.05e-01 | 82.1% | 57.1% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.64 | 48.0 | 3.85e-01 | 80.6% | 49.6% |
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.64 | 48.0 | 4.19e-01 | 82.1% | 65.4% |
| 7fjlA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.63 | 49.0 | 3.83e-01 | 82.1% | 50.4% |
| 2b1xA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.63 | 48.0 | 3.90e-01 | 82.1% | 54.0% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 45.0 | 4.00e-01 | 77.6% | 100.0% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.62 | 46.0 | 3.99e-01 | 80.6% | 65.5% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.62 | 41.0 | 4.72e-01 | 82.1% | 100.0% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.61 | 53.0 | 3.63e-01 | 100.0% | 45.3% |
| 2e11A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.60 | 48.0 | 3.23e-01 | 88.1% | 37.4% |
| 2g8yA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.59 | 45.0 | 3.23e-01 | 85.1% | 71.1% |
| 3lidA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 41.0 | 3.70e-01 | 74.6% | 57.3% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 40.0 | 4.36e-01 | 82.1% | 87.5% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 49.0 | 4.50e-01 | 97.0% | 95.3% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.55 | 43.0 | 3.57e-01 | 86.6% | 50.0% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 42.0 | 3.22e-01 | 83.6% | 49.7% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.54 | 42.0 | 2.97e-01 | 86.6% | 89.4% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 43.0 | 2.54e-01 | 86.6% | 13.1% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.42e-01 | 91.0% | 76.0% |
| 6k8nA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 3.24e-01 | 88.1% | 45.6% |
| 1kvzA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.53 | 45.0 | 3.89e-01 | 95.5% | 93.5% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.51 | 39.0 | 3.59e-01 | 82.1% | 66.3% |
| 1bdgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 38.0 | 2.97e-01 | 82.1% | 62.2% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.51 | 44.0 | 3.55e-01 | 100.0% | 56.2% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2572592 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.81 | 55.0 | 3.85e-01 | 70.1% | 26.2% |
| 5046979 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.76 | 51.0 | 4.33e-01 | 70.1% | 46.4% |
| 4978622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 50.0 | 4.38e-01 | 70.1% | 51.0% |
| 5079671 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 51.0 | 4.31e-01 | 71.6% | 46.4% |
| 4943690 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 52.0 | 4.05e-01 | 74.6% | 73.1% |
| 4977899 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 50.0 | 4.24e-01 | 71.6% | 48.2% |
| 3282813 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.73 | 50.0 | 4.74e-01 | 71.6% | 62.5% |
| 4947581 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.72 | 50.0 | 4.22e-01 | 71.6% | 46.4% |
| 4946458 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.72 | 50.0 | 3.99e-01 | 73.1% | 40.0% |
| 5048741 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.72 | 48.0 | 4.11e-01 | 70.1% | 48.2% |
| 3518783 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.71 | 55.0 | 3.86e-01 | 82.1% | 57.0% |
| 5071765 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.71 | 48.0 | 3.91e-01 | 70.1% | 39.2% |
| 5076068 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.70 | 48.0 | 4.18e-01 | 71.6% | 52.4% |
| 5051614 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 47.0 | 3.88e-01 | 70.1% | 42.4% |
| 5072371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 48.0 | 4.24e-01 | 71.6% | 56.0% |
| 3590871 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 47.0 | 3.10e-01 | 70.1% | 17.7% |
| 5078530 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 48.0 | 4.13e-01 | 71.6% | 49.5% |
| 4976967 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 47.0 | 3.63e-01 | 70.1% | 40.0% |
| 3447550 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.69 | 54.0 | 3.73e-01 | 83.6% | 53.3% |
| 3962266 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.69 | 52.0 | 4.23e-01 | 80.6% | 55.8% |
| 3281830 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.68 | 46.0 | 3.67e-01 | 70.1% | 46.7% |
| 4081039 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.68 | 44.0 | 4.41e-01 | 70.1% | 64.3% |
| 4271660 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.68 | 49.0 | 4.27e-01 | 76.1% | 66.0% |
| 5083148 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.67 | 51.0 | 4.43e-01 | 80.6% | 65.0% |
| 4927204 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 46.0 | 4.18e-01 | 71.6% | 67.8% |
| 5036655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 46.0 | 4.81e-01 | 71.6% | 81.7% |
| 3692635 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.66 | 47.0 | 4.43e-01 | 74.6% | 62.5% |
| 5000609 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 44.0 | 3.66e-01 | 70.1% | 48.8% |
| 4031542 | 66.1.1.2 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 | 0.66 | 50.0 | 4.36e-01 | 80.6% | 64.6% |
| 3790606 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.66 | 45.0 | 3.68e-01 | 71.6% | 47.7% |
| 4929360 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.65 | 50.0 | 4.17e-01 | 82.1% | 75.7% |
| 4998686 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 46.0 | 3.55e-01 | 74.6% | 39.3% |
| 4487967 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.65 | 49.0 | 4.28e-01 | 80.6% | 66.0% |
| 3196140 | 223.2.1.42 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin | 0.65 | 48.0 | 3.32e-01 | 82.1% | 23.6% |
| 4928566 | 223.2.1.62 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 | 0.64 | 46.0 | 3.82e-01 | 76.1% | 53.3% |
| 4988423 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.64 | 48.0 | 4.56e-01 | 80.6% | 91.3% |
| 4445680 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.64 | 48.0 | 3.84e-01 | 80.6% | 49.6% |
| 3968312 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.64 | 49.0 | 4.19e-01 | 82.1% | 62.0% |
| 5011958 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.63 | 47.0 | 4.12e-01 | 79.1% | 63.0% |
| 2807787 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.63 | 48.0 | 3.78e-01 | 82.1% | 48.6% |
| 3282018 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.63 | 50.0 | 4.06e-01 | 85.1% | 58.4% |
| 4983750 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.63 | 50.0 | 3.33e-01 | 88.1% | 35.4% |
| 3837860 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.63 | 48.0 | 3.84e-01 | 82.1% | 50.8% |
| 3326752 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.61 | 46.0 | 3.11e-01 | 83.6% | 43.6% |
| 4989913 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 47.0 | 3.12e-01 | 83.6% | 23.4% |
| 5061404 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 49.0 | 3.25e-01 | 94.0% | 49.8% |
| 3236716 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.59 | 51.0 | 3.21e-01 | 98.5% | 54.1% |
| 4037939 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.58 | 52.0 | 3.91e-01 | 97.0% | 69.7% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.56 | 39.0 | 3.97e-01 | 83.6% | 75.4% |
| 5056572 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.56 | 44.0 | 3.00e-01 | 91.0% | 60.7% |
| 4930189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 40.0 | 4.14e-01 | 85.1% | 88.3% |
| 4032501 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.55 | 40.0 | 3.92e-01 | 77.6% | 80.0% |
| 5059088 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 3.06e-01 | 95.5% | 64.1% |
| 3734423 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 43.0 | 2.75e-01 | 92.5% | 54.6% |
| 5019949 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.54 | 46.0 | 4.09e-01 | 95.5% | 66.3% |
| 4467065 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 44.0 | 3.06e-01 | 100.0% | 76.4% |
| 4287244 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.51 | 35.0 | 2.97e-01 | 73.1% | 70.8% |
D2
medium
residues 1-78
Domain cluster:
rep: MT764845.1__QNN99793.1__P67b_00034__00034__D7-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10073.15 best | GapR_DNA-bd | 90.8 | 4.50e-26 | 91.0% | 98.6% |