←Back to structures

OP596614.1WAX24441.1X__00068

Bact-Vir

OP596614.1__WAX24441.1__X__00068

Identity

Accession:: OP596614 ↗
Kingdom:: phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_ppBeUSDA76-2

TaxID: 3003364

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-68

PDB

Domain cluster: rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00031__D2-73

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5vmzA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.80	36.0	4.50e-01	87.3%	69.2%
5yxgB02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.69	62.0	4.92e-01	100.0%	57.3%
2dx0A00	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.66	34.0	2.75e-01	92.1%	24.8%
2czrA02	3.90.79.30	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain	0.61	37.0	3.00e-01	100.0%	31.7%
4cgyA03	2.70.20.10	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3	0.59	53.0	4.16e-01	100.0%	94.5%
5w1eA01	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.55	38.0	2.70e-01	90.5%	24.6%
3t0qA00	3.40.850.10	Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain	0.52	44.0	2.92e-01	100.0%	22.4%
3bxpB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	39.0	2.61e-01	82.5%	66.0%
2mc2A00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.51	39.0	2.89e-01	92.1%	68.4%
3nqiA01	2.40.50.500	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain	0.50	32.0	3.22e-01	100.0%	63.1%
1igqB00	2.30.30.150	Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain	0.50	38.0	4.02e-01	100.0%	94.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3257121	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.79	39.0	4.77e-01	87.3%	75.0%
2507067	11.1.4.36 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA	0.75	68.0	5.04e-01	100.0%	44.5%
4380861	386.1.1.127 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WT1	0.72	37.0	3.78e-01	87.3%	51.7%
2388502	11.1.4.36 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA	0.70	63.0	4.94e-01	100.0%	54.6%
3743651	6.1.1.11 ↗	beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin	0.62	53.0	4.05e-01	100.0%	84.4%
3268767	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.62	36.0	3.00e-01	88.9%	32.7%
3721295	10.12.1.12 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD	0.52	40.0	2.65e-01	87.3%	43.3%
4227819	10.12.1.12 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD	0.51	39.0	2.51e-01	85.7%	86.0%
146269	2.18.1.0 ↗	beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins	0.50	32.0	3.20e-01	100.0%	62.1%
5057849	210.1.1.0 ↗	a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits	0.50	42.0	3.02e-01	98.4%	82.9%