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OP596615.1__WAX24448.1__X__00006

Bact-Vir

OP596615.1__WAX24448.1__X__00006

Identity

Accession:
OP596615 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_ppBjS10J-1

TaxID: 3003365

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-65
PDB
Domain cluster: rep: MN988459.1__QIG66732.1__EVB27_062__00062__D25-79
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 47.0 3.70e-01 100.0% 32.1%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 50.0 3.71e-01 90.4% 30.0%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.68 43.0 2.78e-01 86.5% 13.4%
4fchA01 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 52.0 4.13e-01 88.5% 68.8%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 38.0 4.24e-01 88.5% 78.9%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 44.0 3.55e-01 90.4% 36.4%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 38.0 2.45e-01 88.5% 12.1%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 38.0 4.19e-01 92.3% 86.5%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.61 41.0 3.32e-01 96.2% 35.6%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.60 49.0 3.56e-01 100.0% 56.1%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 42.0 3.58e-01 76.9% 87.0%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.13e-01 75.0% 92.5%
2gk3A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 34.0 2.20e-01 96.2% 11.4%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.58 47.0 3.95e-01 96.2% 75.5%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.76e-01 90.4% 81.4%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.59e-01 90.4% 90.3%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.57 34.0 3.02e-01 96.2% 36.6%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.81e-01 86.5% 94.3%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.78e-01 90.4% 98.9%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.34e-01 90.4% 97.7%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.12e-01 90.4% 79.5%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.56 45.0 4.63e-01 90.4% 100.0%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 37.0 2.79e-01 75.0% 28.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.67e-01 98.1% 90.9%
3p3yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.15e-01 73.1% 92.2%
2r15A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.20e-01 78.8% 90.6%
1h6uA03 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 2.96e-01 73.1% 76.7%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.53 37.0 3.31e-01 96.2% 50.6%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 35.0 2.32e-01 98.1% 14.1%
2oz4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.30e-01 78.8% 88.0%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 43.0 3.11e-01 96.2% 51.2%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.51 38.0 3.32e-01 82.7% 52.4%
2xvsA00 2.40.50.550 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 2.97e-01 92.3% 50.6%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 36.0 2.52e-01 76.9% 85.4%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.21e-01 88.5% 84.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987123 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.75 52.0 4.36e-01 100.0% 42.2%
3250863 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.72 64.0 5.43e-01 100.0% 61.2%
5027694 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.70 46.0 4.54e-01 76.9% 64.8%
5075144 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.67 47.0 4.21e-01 73.1% 70.7%
4811950 866.1.1.1 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM 0.64 43.0 3.90e-01 88.5% 50.0%
4943668 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 51.0 4.42e-01 94.2% 74.4%
4000737 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.63 52.0 3.95e-01 96.2% 52.3%
3967308 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 45.0 3.22e-01 98.1% 25.5%
3489390 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 48.0 4.21e-01 88.5% 60.0%
4156658 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.60 42.0 2.91e-01 75.0% 91.3%
4138994 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 44.0 4.07e-01 82.7% 95.7%
5051696 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 42.0 4.22e-01 80.8% 72.7%
3259162 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.60 42.0 3.29e-01 82.7% 32.0%
4120496 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.59 48.0 4.34e-01 94.2% 68.0%
4936007 3994.1.1.2 ↗ a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.59 44.0 3.23e-01 94.2% 29.9%
4478491 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 44.0 3.74e-01 90.4% 95.2%
3924850 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.58 48.0 3.79e-01 98.1% 55.2%
5016164 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 3.39e-01 90.4% 82.1%
5035402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 47.0 4.15e-01 92.3% 78.8%
3986836 375.1.1.253 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.58 42.0 4.16e-01 78.8% 83.6%
3587188 2.1.1.33 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 0.58 46.0 3.79e-01 92.3% 93.3%
4939497 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.57 41.0 3.18e-01 78.8% 56.0%
5030516 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 38.0 3.11e-01 94.2% 34.3%
5047683 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.57 44.0 3.23e-01 90.4% 79.3%
3372143 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.57 47.0 3.55e-01 92.3% 41.6%
4997007 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 40.0 3.78e-01 82.7% 60.0%
4992325 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.55 38.0 2.55e-01 75.0% 78.8%
3769484 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 41.0 3.54e-01 78.8% 73.8%
4564327 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.55 37.0 3.20e-01 80.8% 42.2%
5035746 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.17e-01 90.4% 78.1%
1822815 6173.1.1.1 ↗ beta barrels › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › GP120 0.55 39.0 3.98e-01 90.4% 85.4%
4996042 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.54 42.0 3.13e-01 90.4% 85.8%
3949584 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 41.0 3.05e-01 86.5% 78.0%
3693225 3167.1.1.0 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) 0.54 40.0 3.84e-01 82.7% 89.2%
3787176 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 46.0 3.51e-01 100.0% 60.8%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.53 42.0 3.25e-01 92.3% 59.2%
3506373 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 41.0 3.18e-01 94.2% 34.8%
5057111 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.52 38.0 2.97e-01 88.5% 89.7%
3669435 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.77e-01 94.2% 76.2%
5012554 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 2.90e-01 100.0% 83.9%
5077957 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.51 40.0 3.22e-01 100.0% 90.8%
4248693 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.50 41.0 2.94e-01 100.0% 87.6%
3680043 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.20e-01 94.2% 50.8%