Back to structures

OP596615.1__WAX24465.1__X__00023

Bact-Vir

OP596615.1__WAX24465.1__X__00023

Identity

Accession:
OP596615 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 435-550
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.67 53.0 5.54e-01 99.1% 95.1%
3dcyA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 47.0 3.81e-01 99.1% 91.9%
4lwoB02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 43.0 3.77e-01 88.8% 98.9%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.85e-01 94.8% 81.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942383 520.2.1.0 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.83 60.0 6.81e-01 100.0% 96.7%
184462 520.1.1.1 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.70 56.0 4.92e-01 100.0% 58.9%
1070458 520.1.1.1 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.65 54.0 4.82e-01 100.0% 64.4%
4942044 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 50.0 4.10e-01 97.4% 85.7%
3541704 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.54 37.0 3.75e-01 84.5% 70.0%
3278639 3776.1.1.0 beta sandwiches › DNA-entry nuclease inhibitor › DNA-entry nuclease inhibitor › DNA-entry nuclease inhibitor 0.51 44.0 3.94e-01 93.1% 74.4%
5058155 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 44.0 4.24e-01 95.7% 91.5%
D2 medium residues 202-348
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p9hA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.91 72.0 6.60e-01 100.0% 65.9%
2xqhA01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.90 68.0 7.14e-01 94.6% 84.4%
3ultA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.87 65.0 7.40e-01 96.6% 100.0%
3fs8A01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.80 74.0 6.40e-01 100.0% 78.7%
4e79A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.79 74.0 6.47e-01 100.0% 82.4%
3r0sA01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.79 74.0 6.72e-01 100.0% 88.3%
1hv9B02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.78 73.0 6.66e-01 100.0% 81.5%
2ggoA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.77 72.0 6.51e-01 98.6% 87.4%
1thjA00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.77 67.0 5.86e-01 92.5% 81.7%
7whsA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.76 63.0 6.45e-01 98.6% 90.1%
7d73E02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.75 60.0 6.19e-01 85.7% 89.1%
3d98A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.74 66.0 6.58e-01 95.2% 93.4%
4n27A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.74 64.0 6.02e-01 91.8% 82.3%
4m9cA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.74 55.0 6.13e-01 76.9% 100.0%
6sc4A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 64.0 5.95e-01 91.8% 85.3%
2wlgB00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.71 65.0 5.79e-01 100.0% 85.6%
3c8vC03 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.70 62.0 6.07e-01 95.2% 90.6%
1fxjA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 43.0 5.33e-01 85.0% 98.9%
7ar7x01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.68 61.0 5.60e-01 97.3% 74.7%
2yo0A01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.59 45.0 4.43e-01 84.4% 73.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4593120 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.90 71.0 6.59e-01 100.0% 67.4%
4572690 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.90 66.0 7.67e-01 94.6% 100.0%
3250015 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.80 51.0 6.09e-01 85.7% 94.0%
4271095 208.1.1.21 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, Hexapep_2, GMPPB_C 0.78 73.0 6.08e-01 100.0% 71.4%
5008903 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.78 64.0 6.51e-01 99.3% 88.2%
4091859 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.77 72.0 6.35e-01 100.0% 72.4%
4998017 208.1.1.6 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 0.77 72.0 6.43e-01 100.0% 85.0%
4971604 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.77 69.0 6.34e-01 95.2% 87.6%
3673422 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.77 56.0 6.41e-01 78.9% 100.0%
3965420 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.77 62.0 6.77e-01 93.9% 99.2%
4969767 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.76 71.0 6.92e-01 100.0% 96.9%
4883110 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.76 70.0 6.11e-01 100.0% 68.9%
5068063 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.75 57.0 6.34e-01 79.6% 100.0%
2785663 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.74 64.0 6.49e-01 91.2% 100.0%
4597136 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.74 71.0 4.90e-01 100.0% 36.6%
4884075 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.73 64.0 6.03e-01 92.5% 81.9%
5022989 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.73 67.0 5.39e-01 98.6% 55.2%
3782647 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.72 54.0 6.10e-01 91.2% 100.0%
5055476 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.72 61.0 5.85e-01 91.2% 94.1%
5035068 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.71 62.0 6.32e-01 93.9% 100.0%
4807031 208.1.1.6 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 0.70 57.0 5.63e-01 85.7% 85.0%
5080668 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 50.0 5.07e-01 74.8% 84.1%
None 0.68 62.0 5.91e-01 98.0% 93.5%
None 0.67 62.0 5.80e-01 98.0% 88.0%
3354774 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.67 61.0 5.45e-01 98.0% 84.9%
4028622 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.67 62.0 5.73e-01 100.0% 85.9%
3511243 208.1.1.9 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 0.67 61.0 6.15e-01 97.3% 98.6%
3623257 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.66 61.0 5.76e-01 98.6% 87.3%
3787853 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.65 60.0 6.10e-01 98.0% 100.0%
3182022 208.1.1.2 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac 0.63 56.0 5.00e-01 95.2% 83.3%
5002520 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.63 54.0 4.79e-01 92.5% 87.1%
3587478 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.62 56.0 5.20e-01 95.9% 83.3%
3598522 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.60 54.0 4.28e-01 97.3% 88.0%
4013675 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.60 50.0 4.63e-01 88.4% 84.3%
D3 medium residues 349-426
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yo3A02 2.60.40.4050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 47.0 5.65e-01 97.4% 92.6%
5jxxA01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.70 51.0 3.87e-01 97.4% 31.9%
1fxjA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.67 48.0 4.55e-01 93.6% 63.4%
1p9hA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.65 54.0 4.02e-01 100.0% 38.0%
3cj8A03 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.64 52.0 4.31e-01 97.4% 50.0%
4e79A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.63 57.0 4.16e-01 100.0% 54.8%
2yo0A01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.59 55.0 4.27e-01 100.0% 55.3%
7d73C02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.59 53.0 4.10e-01 98.7% 69.0%
3bfpA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.58 53.0 4.57e-01 100.0% 77.3%
6sc4A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.58 50.0 3.88e-01 97.4% 52.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041808 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 49.0 4.89e-01 93.6% 73.8%
3185731 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.66 58.0 4.35e-01 97.4% 52.3%
3958123 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.62 51.0 4.62e-01 94.9% 66.7%
3943780 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.61 53.0 4.33e-01 97.4% 51.3%
3965888 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.58 55.0 3.93e-01 100.0% 40.0%
5037988 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.58 52.0 4.11e-01 100.0% 56.9%
3797002 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.57 51.0 4.43e-01 100.0% 64.7%
3255570 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.57 51.0 4.05e-01 100.0% 80.0%
4249924 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.57 51.0 3.76e-01 98.7% 46.3%
5077960 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.57 51.0 4.55e-01 98.7% 80.9%
979110 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.57 50.0 3.90e-01 100.0% 73.4%
4388425 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.56 50.0 4.36e-01 98.7% 70.8%
4884075 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.56 49.0 3.89e-01 100.0% 68.4%
3937628 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.56 50.0 4.36e-01 98.7% 79.0%
4938550 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.56 49.0 3.92e-01 100.0% 85.4%
4046208 208.1.1.15 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU 0.56 50.0 4.61e-01 100.0% 90.0%