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OP596615.1__WAX24515.1__X__00073

Bact-Vir

OP596615.1__WAX24515.1__X__00073

Identity

Accession:
OP596615 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-73
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 50.0 4.12e-01 98.4% 50.4%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 49.0 3.63e-01 98.4% 62.4%
4w91B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 48.0 3.81e-01 98.4% 65.9%
5n6uA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 42.0 2.62e-01 79.0% 27.5%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 48.0 3.73e-01 98.4% 56.7%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.26e-01 100.0% 79.2%
2b9wA03 3.30.70.1990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.44e-01 85.5% 85.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286341 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 54.0 4.20e-01 100.0% 46.7%
4203354 252.2.1.9 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.60 51.0 4.51e-01 98.4% 64.2%
3782669 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 50.0 4.84e-01 96.8% 97.1%
3484286 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 50.0 3.88e-01 100.0% 59.3%
3947088 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 46.0 4.35e-01 100.0% 97.6%
3368878 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 49.0 3.34e-01 95.2% 34.1%
3471158 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.57 49.0 3.79e-01 100.0% 57.2%
4416214 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.56 45.0 4.26e-01 100.0% 98.8%
4034049 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.56 48.0 3.24e-01 100.0% 68.1%
3604284 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.53e-01 100.0% 50.5%
3651891 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 44.0 4.04e-01 96.8% 69.6%
4929823 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 32.0 3.44e-01 87.1% 75.5%
2114533 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.51 36.0 2.42e-01 87.1% 19.3%
3191446 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.50 41.0 3.19e-01 96.8% 72.3%
D2 high residues 86-185
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 77.0 7.72e-01 100.0% 92.0%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.85 73.0 6.91e-01 100.0% 78.4%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.84 73.0 6.90e-01 100.0% 78.8%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.79 71.0 7.04e-01 99.0% 93.3%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.76 65.0 6.26e-01 100.0% 83.0%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.72 57.0 6.12e-01 88.0% 100.0%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.71 59.0 6.05e-01 99.0% 94.7%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.62 49.0 5.18e-01 98.0% 94.3%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 49.0 4.39e-01 88.0% 62.3%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 41.0 3.32e-01 72.0% 44.5%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.59 51.0 4.69e-01 98.0% 85.1%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 46.0 3.56e-01 87.0% 56.6%
6xy4A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 42.0 3.99e-01 82.0% 62.6%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.58 50.0 4.38e-01 100.0% 71.4%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.57 47.0 4.22e-01 94.0% 66.7%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 36.0 3.78e-01 88.0% 70.3%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.39e-01 100.0% 71.7%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 4.40e-01 100.0% 76.3%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 40.0 3.37e-01 76.0% 63.0%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.54 39.0 3.85e-01 100.0% 69.7%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 4.27e-01 100.0% 83.6%
2ijqA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.53 36.0 3.20e-01 100.0% 47.6%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 32.0 3.15e-01 96.0% 55.1%
3hj1A01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.51 41.0 3.19e-01 90.0% 84.2%
4yj6A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.51 44.0 2.87e-01 100.0% 33.5%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 41.0 3.50e-01 89.0% 71.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.90 79.0 7.93e-01 100.0% 92.0%
3965042 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.85 74.0 7.01e-01 100.0% 80.0%
4028829 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.84 74.0 7.46e-01 100.0% 94.0%
3946029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.84 72.0 6.86e-01 100.0% 80.0%
3948596 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.83 73.0 6.98e-01 100.0% 81.7%
4655797 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 70.0 7.15e-01 98.0% 97.9%
4396981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 70.0 7.06e-01 100.0% 95.0%
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 69.0 6.92e-01 100.0% 93.0%
4040148 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 70.0 7.08e-01 100.0% 97.0%
4667626 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 69.0 6.96e-01 99.0% 96.0%
3504160 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 70.0 6.78e-01 100.0% 88.2%
4947439 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.78 63.0 6.59e-01 98.0% 95.6%
4362692 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 70.0 7.07e-01 100.0% 98.0%
4130034 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 69.0 6.71e-01 100.0% 88.2%
4090274 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 70.0 6.94e-01 99.0% 93.3%
4069480 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 69.0 6.69e-01 100.0% 88.2%
4959184 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.77 66.0 6.80e-01 99.0% 98.9%
4964250 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.77 69.0 6.57e-01 100.0% 85.2%
4520087 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 68.0 6.88e-01 100.0% 97.0%
4487415 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 68.0 6.51e-01 100.0% 84.3%
4175280 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 69.0 6.85e-01 100.0% 100.0%
5022016 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.76 62.0 6.35e-01 100.0% 92.6%
3943489 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 66.0 6.64e-01 98.0% 95.0%
4579981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 67.0 6.52e-01 100.0% 89.1%
4220256 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.74 66.0 6.43e-01 100.0% 88.2%
4657272 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.74 65.0 6.41e-01 100.0% 90.5%
4979940 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.73 67.0 6.48e-01 100.0% 90.9%
4973412 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.73 50.0 5.63e-01 73.0% 93.3%
135559 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.73 61.0 6.13e-01 98.0% 89.3%
4406523 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.72 65.0 6.36e-01 100.0% 90.0%
5081699 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.71 58.0 6.07e-01 98.0% 97.8%
4022086 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.67 39.0 2.55e-01 72.0% 13.9%
4977760 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.64 57.0 5.44e-01 100.0% 92.5%
5041258 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.63 57.0 5.28e-01 100.0% 83.2%
3279122 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.63 56.0 5.46e-01 100.0% 91.8%
3640245 109.58.1.1 alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.58 41.0 3.84e-01 75.0% 74.6%
3783164 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 44.0 2.73e-01 86.0% 62.4%
3377718 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.54 40.0 3.54e-01 78.0% 86.2%
3242139 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.53 36.0 3.16e-01 80.0% 45.3%
3173506 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 46.0 4.27e-01 100.0% 86.2%
3514683 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 41.0 4.02e-01 87.0% 80.0%
3756535 604.1.1.5 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3 0.51 40.0 3.81e-01 98.0% 73.0%
3684979 192.3.1.0 alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.50 40.0 4.09e-01 87.0% 96.8%
3892500 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 39.0 3.84e-01 98.0% 76.4%
3603360 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 45.0 4.28e-01 98.0% 85.2%
3580282 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 45.0 4.26e-01 99.0% 88.3%
D3 medium residues 210-283_315-330
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rt3B01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 27.0 2.92e-01 100.0% 48.0%