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OP599913.1__UZV40087.1__X__00081

Bact-Vir

OP599913.1__UZV40087.1__X__00081

Identity

Accession:
OP599913 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 54.0 5.19e-01 100.0% 77.2%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 3.30e-01 100.0% 26.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 46.0 3.65e-01 100.0% 35.7%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 45.0 3.73e-01 98.6% 39.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 47.0 3.20e-01 80.0% 44.2%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 49.0 3.25e-01 85.7% 44.2%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 42.0 3.91e-01 97.1% 54.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.90e-01 100.0% 84.7%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 55.0 4.48e-01 100.0% 78.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.61e-01 100.0% 85.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 35.0 3.45e-01 81.4% 50.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.61e-01 100.0% 87.3%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 52.0 4.37e-01 100.0% 83.5%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.16e-01 100.0% 79.5%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 3.98e-01 97.1% 94.6%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 45.0 3.01e-01 84.3% 49.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.51e-01 100.0% 86.4%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.58 48.0 4.11e-01 100.0% 75.4%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 51.0 3.84e-01 100.0% 82.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 36.0 4.11e-01 98.6% 95.8%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.57 50.0 3.93e-01 100.0% 57.0%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.62e-01 100.0% 61.8%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 47.0 3.92e-01 100.0% 68.8%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.91e-01 100.0% 72.1%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.11e-01 98.6% 85.3%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.54 45.0 4.04e-01 100.0% 81.7%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.71e-01 100.0% 71.6%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 44.0 3.33e-01 91.4% 48.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.58e-01 92.9% 69.0%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 44.0 3.70e-01 100.0% 69.9%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.53 44.0 3.99e-01 97.1% 71.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 42.0 3.76e-01 100.0% 62.7%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.51 43.0 3.58e-01 94.3% 73.6%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 3.91e-01 100.0% 81.5%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.51 42.0 3.46e-01 100.0% 68.9%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 45.0 2.99e-01 100.0% 29.4%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 2.61e-01 91.4% 81.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 39.0 2.92e-01 85.7% 58.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950462 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.74 48.0 5.17e-01 100.0% 78.3%
4545039 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.74 54.0 5.46e-01 100.0% 77.1%
4956007 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.71 52.0 4.56e-01 98.6% 52.4%
3221229 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 42.0 4.98e-01 98.6% 93.3%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 44.0 4.47e-01 81.4% 65.7%
1140833 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.67 45.0 4.45e-01 100.0% 65.8%
4675864 207.12.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region › M_large_dom 0.67 46.0 2.89e-01 71.4% 29.9%
3841163 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.66 53.0 4.98e-01 100.0% 71.1%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 43.0 4.44e-01 100.0% 76.9%
3934544 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 43.0 2.79e-01 92.9% 15.4%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 45.0 4.65e-01 100.0% 83.1%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 45.0 4.63e-01 100.0% 83.1%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 44.0 4.61e-01 100.0% 83.1%
4950072 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.61 44.0 3.74e-01 78.6% 47.2%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 44.0 4.56e-01 100.0% 83.1%
None 0.60 38.0 2.58e-01 91.4% 17.3%
5052962 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.60 45.0 3.69e-01 81.4% 47.0%
5031820 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 48.0 4.19e-01 100.0% 55.0%
4139532 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.60 43.0 3.59e-01 78.6% 43.7%
None 0.60 43.0 2.75e-01 75.7% 26.2%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 44.0 4.58e-01 100.0% 84.6%
3927761 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 41.0 2.70e-01 82.9% 15.5%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.66e-01 100.0% 84.3%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 43.0 4.50e-01 100.0% 83.1%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 44.0 4.53e-01 100.0% 84.6%
4266402 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.59 44.0 3.69e-01 80.0% 48.0%
5036065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 49.0 4.87e-01 100.0% 86.7%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 44.0 4.58e-01 100.0% 87.7%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 44.0 4.57e-01 100.0% 87.7%
4237498 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 44.0 3.67e-01 97.1% 46.4%
4976921 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 50.0 3.24e-01 100.0% 32.5%
3196261 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.57 42.0 3.42e-01 80.0% 52.1%
4579550 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 45.0 3.71e-01 100.0% 46.9%
1298711 9.1.1.13 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ZinT 0.57 48.0 3.63e-01 100.0% 59.1%
3727583 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.57 47.0 3.09e-01 97.1% 38.0%
3933099 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.57 45.0 4.30e-01 100.0% 72.9%
4391625 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 43.0 3.82e-01 91.4% 54.5%
3486847 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.57 43.0 3.87e-01 100.0% 57.1%
3972573 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.56 43.0 3.69e-01 82.9% 52.2%
3953070 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.56 47.0 4.19e-01 100.0% 84.5%
3679001 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 50.0 3.71e-01 100.0% 44.1%
3397645 5.1.4.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.56 51.0 3.23e-01 100.0% 21.6%
3807906 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.56 47.0 3.45e-01 100.0% 66.0%
3948020 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.56 44.0 3.83e-01 87.1% 99.1%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 41.0 3.48e-01 91.4% 45.4%
4393122 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 41.0 3.51e-01 91.4% 47.2%
2885396 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.54 39.0 3.41e-01 78.6% 50.4%
4679671 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 43.0 3.71e-01 88.6% 82.2%
4304505 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 42.0 3.41e-01 82.9% 81.5%
5044712 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 42.0 3.43e-01 87.1% 54.3%
3603483 3513.1.1.0 a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.54 48.0 3.97e-01 100.0% 86.4%
3594372 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 47.0 2.81e-01 100.0% 58.6%
3536617 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.53 44.0 3.76e-01 100.0% 60.8%
4348096 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.53 41.0 3.15e-01 85.7% 52.1%
4124320 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 41.0 3.46e-01 98.6% 48.5%
3472797 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.52 46.0 3.69e-01 98.6% 67.1%
4945086 239.5.1.0 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain 0.52 37.0 3.76e-01 100.0% 77.1%
3653604 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 43.0 3.47e-01 100.0% 63.9%
5026971 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.51 42.0 3.92e-01 95.7% 72.9%
5081005 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.51 41.0 3.91e-01 95.7% 73.5%
3761549 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.50 37.0 3.05e-01 80.0% 84.4%
3632230 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.50 44.0 3.85e-01 100.0% 80.0%
6235 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 42.0 3.14e-01 95.7% 46.8%
D2 high residues 88-176
PDB