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OP617741.1__UYL04342.1__EPNKCIFM_00021__00021

Bact-Vir

OP617741.1__UYL04342.1__EPNKCIFM_00021__00021

Identity

Accession:
OP617741 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_KP13-16

TaxID: 2985658

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-60
PDB
Domain cluster: rep: MK095606.1__AZS06355.1__AAS23_gp42__00042__D2-54
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 62.0 6.47e-01 100.0% 94.1%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 5.94e-01 100.0% 73.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 67.0 5.94e-01 100.0% 69.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.74 65.0 5.91e-01 100.0% 84.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.06e-01 100.0% 63.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 6.24e-01 100.0% 98.1%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.72 55.0 4.64e-01 100.0% 49.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 6.15e-01 100.0% 93.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 5.87e-01 100.0% 80.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 4.89e-01 100.0% 47.1%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 5.95e-01 100.0% 85.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 6.16e-01 100.0% 93.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.98e-01 100.0% 69.1%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.13e-01 100.0% 66.7%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.15e-01 100.0% 64.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.76e-01 100.0% 84.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 49.0 5.10e-01 100.0% 86.5%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 50.0 5.14e-01 100.0% 85.2%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.36e-01 100.0% 52.8%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.69e-01 100.0% 60.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.47e-01 96.4% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.23e-01 100.0% 88.6%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.50e-01 100.0% 94.7%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 55.0 5.00e-01 100.0% 83.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 51.0 5.03e-01 100.0% 83.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 4.74e-01 100.0% 79.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.10e-01 100.0% 89.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 44.0 4.62e-01 94.6% 91.3%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 54.0 3.64e-01 100.0% 34.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.30e-01 100.0% 68.2%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 52.0 3.76e-01 100.0% 78.9%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.60 49.0 4.23e-01 100.0% 56.7%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 47.0 3.41e-01 92.9% 62.9%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 34.0 3.44e-01 80.4% 59.3%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.19e-01 100.0% 27.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 39.0 3.25e-01 82.1% 95.6%
4z04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.01e-01 82.1% 79.8%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 59.0 5.97e-01 100.0% 78.2%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 62.0 6.25e-01 100.0% 87.3%
3259044 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 66.0 6.67e-01 100.0% 96.4%
3931805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.14e-01 94.6% 94.0%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 59.0 5.59e-01 100.0% 73.8%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.74 57.0 4.93e-01 100.0% 53.3%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.74 52.0 5.28e-01 100.0% 76.4%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 57.0 4.08e-01 83.9% 30.6%
3399912 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 64.0 5.92e-01 100.0% 77.1%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 6.05e-01 98.2% 86.7%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.73 64.0 5.52e-01 100.0% 63.5%
5005903 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.73 56.0 4.68e-01 100.0% 48.0%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.66e-01 100.0% 90.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 53.0 5.51e-01 100.0% 88.0%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.77e-01 100.0% 77.9%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.72 64.0 5.21e-01 100.0% 63.8%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 63.0 4.31e-01 100.0% 28.4%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 6.18e-01 100.0% 90.0%
3931369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 56.0 5.91e-01 85.7% 100.0%
3264808 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.72 56.0 5.25e-01 100.0% 68.6%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.72 63.0 4.87e-01 100.0% 57.6%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.49e-01 100.0% 76.9%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.72 54.0 5.47e-01 100.0% 83.6%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 5.94e-01 100.0% 84.4%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.71 61.0 4.30e-01 100.0% 31.2%
4474739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.71e-01 100.0% 73.3%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.71 63.0 4.90e-01 100.0% 58.3%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.69e-01 100.0% 89.1%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 55.0 5.57e-01 85.7% 100.0%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.59e-01 78.6% 100.0%
3425872 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.70 61.0 5.23e-01 98.2% 80.0%
4669027 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 60.0 3.99e-01 100.0% 24.6%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.89e-01 98.2% 62.7%
None — 0.70 61.0 3.69e-01 100.0% 18.0%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 54.0 4.45e-01 100.0% 45.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 3.62e-01 100.0% 21.3%
4932493 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.19e-01 100.0% 73.8%
3270324 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 53.0 5.55e-01 100.0% 94.0%
3302829 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 54.0 5.18e-01 100.0% 73.8%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 59.0 5.66e-01 100.0% 81.5%
3575066 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 6.09e-01 100.0% 98.3%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.69 60.0 5.39e-01 100.0% 90.0%
3302391 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.69 60.0 4.54e-01 100.0% 51.4%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.26e-01 100.0% 80.0%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.56e-01 100.0% 86.7%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.88e-01 100.0% 87.7%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.79e-01 100.0% 90.0%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 60.0 5.59e-01 100.0% 87.1%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.89e-01 100.0% 62.5%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 52.0 5.32e-01 98.2% 87.3%
4031435 4.1.1.143 ↗ beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.68 58.0 5.53e-01 100.0% 83.1%
4184660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 4.55e-01 100.0% 46.2%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.05e-01 100.0% 83.6%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.67 55.0 5.39e-01 100.0% 85.0%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.67 53.0 5.36e-01 100.0% 90.9%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.48e-01 100.0% 86.7%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 4.86e-01 100.0% 68.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 51.0 4.88e-01 100.0% 72.5%
2700914 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 51.0 4.59e-01 100.0% 60.0%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.43e-01 100.0% 92.3%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 54.0 5.36e-01 100.0% 88.3%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 56.0 5.25e-01 100.0% 78.6%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.85e-01 100.0% 79.3%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.25e-01 100.0% 85.7%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.25e-01 100.0% 98.0%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.64 51.0 4.08e-01 100.0% 42.5%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.64 55.0 5.05e-01 100.0% 73.3%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.64 50.0 4.81e-01 100.0% 75.4%
3687555 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.63 50.0 4.20e-01 100.0% 50.0%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.23e-01 100.0% 88.3%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.14e-01 100.0% 88.3%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.62 53.0 5.10e-01 100.0% 89.2%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 50.0 4.66e-01 100.0% 72.0%
3925426 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.60 50.0 3.88e-01 100.0% 60.0%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.96e-01 100.0% 88.6%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.56 46.0 4.33e-01 100.0% 73.3%
5073041 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.78e-01 82.1% 76.2%
3716073 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.54 44.0 3.15e-01 100.0% 42.0%
D2 medium residues 63-99
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.71 62.0 3.57e-01 100.0% 34.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277747 160.1.1.0 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.69 46.0 4.59e-01 73.0% 62.5%