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OP617743.1__UYL04672.1__EBOKLHFM_00052__00052

Bact-Vir

OP617743.1__UYL04672.1__EBOKLHFM_00052__00052

Identity

Accession:
OP617743 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_KP13-26

TaxID: 2985660

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.89 64.0 6.94e-01 100.0% 90.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 63.0 5.93e-01 100.0% 63.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 62.0 6.89e-01 96.7% 100.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.84 57.0 6.03e-01 100.0% 79.6%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 60.0 5.21e-01 100.0% 51.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.30e-01 100.0% 79.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 6.11e-01 100.0% 79.7%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 64.0 6.60e-01 100.0% 89.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 68.0 6.13e-01 100.0% 69.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.83e-01 100.0% 82.1%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.87e-01 95.0% 89.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 6.62e-01 100.0% 93.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 6.36e-01 100.0% 85.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.77 62.0 5.99e-01 100.0% 79.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 55.0 5.79e-01 100.0% 85.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 61.0 6.26e-01 100.0% 93.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 63.0 5.01e-01 100.0% 47.1%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.53e-01 100.0% 88.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.57e-01 100.0% 71.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 6.18e-01 100.0% 93.3%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.71 62.0 5.61e-01 100.0% 77.1%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 61.0 6.05e-01 100.0% 98.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 61.0 5.92e-01 100.0% 86.6%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 60.0 5.43e-01 100.0% 76.2%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.63e-01 100.0% 83.3%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 56.0 3.84e-01 100.0% 28.6%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.64 39.0 3.33e-01 90.0% 36.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.63e-01 100.0% 74.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.87e-01 100.0% 67.9%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.12e-01 93.3% 55.1%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 48.0 3.70e-01 100.0% 38.2%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 3.56e-01 75.0% 38.8%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.13e-01 100.0% 53.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 4.09e-01 80.0% 65.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 46.0 4.43e-01 93.3% 77.5%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 50.0 3.57e-01 100.0% 73.9%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 45.0 3.05e-01 86.7% 46.2%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 48.0 3.57e-01 100.0% 81.1%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.94e-01 100.0% 96.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.56 48.0 3.52e-01 100.0% 94.3%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.63e-01 90.0% 74.6%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.67e-01 100.0% 68.5%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 49.0 3.47e-01 100.0% 39.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 49.0 3.34e-01 100.0% 34.1%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 39.0 3.93e-01 93.3% 77.0%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 44.0 3.00e-01 93.3% 48.8%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.67e-01 100.0% 95.4%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.54 37.0 3.14e-01 86.7% 40.7%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.77e-01 95.0% 58.7%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.53e-01 100.0% 74.6%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.53 43.0 4.10e-01 96.7% 82.4%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.31e-01 95.0% 57.4%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.58e-01 96.7% 21.2%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 41.0 3.05e-01 93.3% 87.0%
2r6uA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 34.0 2.84e-01 71.7% 99.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.50 39.0 2.47e-01 98.3% 34.4%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701950 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 60.0 6.09e-01 100.0% 73.3%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 65.0 5.12e-01 100.0% 42.6%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.84 59.0 6.17e-01 100.0% 80.0%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.82 72.0 5.99e-01 100.0% 57.0%
3882695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 69.0 6.90e-01 100.0% 90.0%
3882696 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.82 68.0 6.11e-01 100.0% 67.5%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 6.12e-01 100.0% 83.6%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 69.0 7.15e-01 100.0% 100.0%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 60.0 6.31e-01 100.0% 87.3%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 5.76e-01 100.0% 81.8%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.77 63.0 5.62e-01 100.0% 63.5%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.63e-01 100.0% 93.3%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 70.0 6.17e-01 100.0% 85.9%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 63.0 6.36e-01 100.0% 90.0%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 69.0 6.22e-01 100.0% 90.0%
None — 0.75 68.0 4.08e-01 100.0% 18.0%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.07e-01 100.0% 57.6%
3596265 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.63e-01 100.0% 67.0%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.79e-01 100.0% 73.3%
3616622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.41e-01 100.0% 90.5%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.02e-01 100.0% 84.0%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.73 66.0 5.16e-01 100.0% 57.6%
3879172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 65.0 6.33e-01 100.0% 89.2%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 64.0 6.06e-01 100.0% 81.4%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.73 55.0 5.70e-01 100.0% 87.3%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 64.0 5.99e-01 100.0% 85.1%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.72 64.0 4.50e-01 100.0% 33.1%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.72e-01 100.0% 97.6%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 64.0 6.23e-01 100.0% 93.8%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 61.0 5.73e-01 100.0% 82.7%
3473464 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 57.0 4.11e-01 100.0% 32.3%
4140958 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 58.0 5.39e-01 100.0% 73.3%
3504086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.47e-01 100.0% 85.6%
5008645 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 60.0 5.65e-01 100.0% 82.7%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.32e-01 100.0% 84.2%
3590315 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 59.0 5.55e-01 100.0% 82.7%
4680746 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.68 58.0 5.34e-01 98.3% 73.3%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 56.0 5.88e-01 93.3% 100.0%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.89e-01 100.0% 95.4%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.64e-01 100.0% 86.2%
5018743 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.41e-01 100.0% 82.7%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 5.37e-01 100.0% 84.7%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.50e-01 100.0% 85.7%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.16e-01 100.0% 77.1%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.64e-01 100.0% 87.1%
4110324 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.65 55.0 5.12e-01 100.0% 86.3%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 59.0 4.32e-01 100.0% 53.3%
3457922 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.64 45.0 3.38e-01 75.0% 53.1%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 5.03e-01 100.0% 75.3%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.55e-01 100.0% 69.3%
3974499 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.61 48.0 3.26e-01 91.7% 79.6%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.60 45.0 3.38e-01 83.3% 93.8%
3967347 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 49.0 4.59e-01 100.0% 73.3%
5027066 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 46.0 3.71e-01 90.0% 90.4%
3722817 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.56 44.0 2.75e-01 88.3% 24.7%
3639196 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.55 39.0 4.11e-01 83.3% 93.9%
None — 0.55 46.0 2.87e-01 95.0% 26.8%
3415399 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 45.0 3.08e-01 93.3% 38.6%
1160869 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 37.0 3.77e-01 86.7% 75.4%
3696318 5.1.4.249 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.53 43.0 2.66e-01 91.7% 25.9%
3882163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 2.61e-01 80.0% 25.1%
3210000 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 41.0 2.55e-01 88.3% 21.2%
3199868 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 41.0 2.44e-01 88.3% 45.1%
5034238 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.52 38.0 2.85e-01 81.7% 51.7%
3806012 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 44.0 2.79e-01 96.7% 95.5%
4959306 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 41.0 2.70e-01 95.0% 44.5%
3022412 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 41.0 3.16e-01 86.7% 84.5%
4038410 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 38.0 3.08e-01 86.7% 91.4%
3961519 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 41.0 2.63e-01 93.3% 28.7%
5018327 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.50 37.0 2.79e-01 83.3% 50.9%
5018923 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.50 36.0 3.48e-01 91.7% 65.3%
3850089 241.15.1.5 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › RM5_Med14 0.50 41.0 3.37e-01 93.3% 72.2%
D2 high residues 77-139
PDB
Domain cluster: rep: MZ208805.1__QWY13504.1__X__00015__D11-70