Back to structures

OP617743.1__UYL04676.1__EBOKLHFM_00056__00056

Bact-Vir

OP617743.1__UYL04676.1__EBOKLHFM_00056__00056

Identity

Accession:
OP617743 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 50.0 4.09e-01 74.2% 45.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.31e-01 90.9% 83.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.46e-01 97.0% 91.5%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.40e-01 100.0% 84.4%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.42e-01 100.0% 45.9%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 56.0 4.88e-01 100.0% 59.6%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 59.0 4.50e-01 100.0% 57.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 56.0 4.91e-01 100.0% 62.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.66 58.0 5.26e-01 100.0% 87.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.13e-01 90.9% 77.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 56.0 4.59e-01 100.0% 66.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 5.20e-01 87.9% 90.3%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 55.0 4.59e-01 100.0% 63.9%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 51.0 4.40e-01 86.4% 89.2%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.21e-01 90.9% 23.9%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 56.0 4.35e-01 100.0% 60.7%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 55.0 4.33e-01 100.0% 63.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.00e-01 100.0% 91.9%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 52.0 4.00e-01 100.0% 47.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 5.25e-01 100.0% 90.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.82e-01 100.0% 80.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 4.17e-01 100.0% 43.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 5.02e-01 100.0% 86.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 4.59e-01 84.8% 88.7%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.59 50.0 3.46e-01 100.0% 71.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 5.03e-01 97.0% 100.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 51.0 4.43e-01 100.0% 75.0%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.25e-01 87.9% 71.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.43e-01 100.0% 87.7%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.88e-01 93.9% 75.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.49e-01 84.8% 100.0%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.63e-01 80.3% 89.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.74e-01 95.5% 93.0%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 35.0 3.75e-01 72.7% 72.4%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 32.0 3.68e-01 75.8% 83.3%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 48.0 4.61e-01 100.0% 90.8%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 44.0 3.82e-01 86.4% 81.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 46.0 4.23e-01 100.0% 68.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.34e-01 74.2% 50.9%
4dk0A02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 48.0 4.40e-01 100.0% 80.0%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 44.0 4.22e-01 87.9% 78.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.02e-01 93.9% 77.1%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.54 43.0 3.77e-01 86.4% 82.2%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.54 41.0 2.89e-01 100.0% 24.0%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 45.0 4.42e-01 100.0% 89.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 46.0 4.05e-01 100.0% 68.3%
4tjvA00 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.52 40.0 3.14e-01 90.9% 98.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 41.0 4.03e-01 93.9% 86.5%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 44.0 3.82e-01 100.0% 66.7%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 2.99e-01 90.9% 80.9%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 2.98e-01 89.4% 63.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.50 42.0 3.85e-01 100.0% 78.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.50 38.0 3.48e-01 100.0% 61.5%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 54.0 5.61e-01 100.0% 83.3%
3631313 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.72 64.0 4.60e-01 100.0% 43.7%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 65.0 5.69e-01 100.0% 70.5%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.71 63.0 5.71e-01 100.0% 72.2%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 6.13e-01 100.0% 98.4%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.71 64.0 5.86e-01 100.0% 78.8%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.43e-01 98.5% 77.3%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 63.0 5.66e-01 100.0% 74.4%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.68 60.0 5.57e-01 100.0% 87.1%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.68 52.0 5.15e-01 97.0% 78.6%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 60.0 5.26e-01 100.0% 68.0%
3584109 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 60.0 4.65e-01 100.0% 72.9%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 50.0 5.28e-01 90.9% 89.8%
5069062 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 52.0 5.40e-01 97.0% 93.2%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.24e-01 90.9% 88.3%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.94e-01 100.0% 64.2%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.67 59.0 5.35e-01 100.0% 83.3%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.67 55.0 4.94e-01 100.0% 64.2%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 59.0 5.00e-01 100.0% 61.8%
3484700 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 58.0 5.03e-01 100.0% 64.0%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 54.0 5.64e-01 98.5% 100.0%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.01e-01 90.9% 81.5%
5012425 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 58.0 4.54e-01 100.0% 59.3%
608 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 56.0 4.91e-01 100.0% 62.5%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.66e-01 100.0% 96.9%
5058103 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.05e-01 97.0% 82.4%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.14e-01 97.0% 91.7%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.97e-01 97.0% 83.1%
4956630 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 53.0 4.06e-01 100.0% 38.7%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 58.0 3.99e-01 100.0% 30.2%
3512902 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.65 49.0 5.28e-01 98.5% 100.0%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.63e-01 100.0% 62.1%
3791777 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 56.0 5.14e-01 97.0% 88.2%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 49.0 5.02e-01 87.9% 86.2%
3915014 5.1.4.308 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL 0.64 51.0 3.10e-01 89.4% 17.1%
3888395 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 55.0 5.14e-01 100.0% 95.2%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.44e-01 100.0% 98.4%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.55e-01 100.0% 56.7%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 51.0 5.15e-01 100.0% 92.3%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.62 54.0 4.73e-01 100.0% 72.1%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 54.0 5.39e-01 98.5% 95.7%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 50.0 4.81e-01 100.0% 78.7%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.68e-01 90.9% 86.7%
None 0.62 53.0 3.40e-01 100.0% 39.0%
4959856 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 37.0 3.72e-01 95.5% 57.1%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.08e-01 100.0% 90.6%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 53.0 4.70e-01 100.0% 67.4%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 48.0 4.65e-01 100.0% 78.7%
3623256 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 51.0 3.66e-01 100.0% 59.5%
3806777 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 53.0 5.09e-01 100.0% 93.3%
3615426 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 52.0 4.03e-01 100.0% 46.7%
3505589 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.59 47.0 3.98e-01 100.0% 50.0%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 52.0 4.99e-01 100.0% 97.3%
3332690 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 49.0 4.36e-01 100.0% 64.0%
3517374 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.58 49.0 3.40e-01 100.0% 62.0%
3971757 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.20e-01 100.0% 76.7%
3990594 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.58 48.0 3.51e-01 100.0% 67.0%
4502283 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.57 49.0 3.53e-01 100.0% 65.1%
3761318 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.57 48.0 4.80e-01 100.0% 90.0%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.56 46.0 4.26e-01 98.5% 70.6%
3387966 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 46.0 4.26e-01 100.0% 71.8%
3574641 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 46.0 3.27e-01 92.4% 34.6%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 47.0 4.17e-01 100.0% 74.3%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.55 48.0 4.69e-01 100.0% 92.0%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.47e-01 100.0% 80.0%
3949068 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.55 47.0 3.79e-01 100.0% 64.3%
3971461 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 47.0 4.29e-01 100.0% 76.7%
3430385 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.54 44.0 3.60e-01 90.9% 67.2%
4565791 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.54 47.0 4.29e-01 100.0% 76.7%
3968971 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.53 47.0 4.24e-01 100.0% 75.6%
4329871 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 41.0 3.07e-01 89.4% 44.2%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.92e-01 90.9% 86.7%
3166182 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.52 45.0 4.14e-01 100.0% 77.8%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 46.0 4.20e-01 100.0% 74.4%
3684661 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.52 42.0 3.31e-01 89.4% 42.9%
3928426 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.51 41.0 3.00e-01 100.0% 56.6%