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OP617743.1__UYL04721.1__EBOKLHFM_00101__00101
Bact-VirOP617743.1__UYL04721.1__EBOKLHFM_00101__00101
Identity
- Accession:
- OP617743 ↗
- Kingdom:
- phage
Quality
95.9
mean pLDDT
Cluster
View cluster (115 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-149_183-206
Domain cluster:
rep: IMGVR_UViG_3300025314_001605-3300025314-Ga0209323_100081116__D2-134_169-192
Pfam (6)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04321.24 best | RmlD_sub_bind | 160.7 | 5.70e-47 | 97.7% | 56.8% |
| PF01370.28 | Epimerase | 73.3 | 2.90e-20 | 93.6% | 65.4% |
| PF07993.19 | NAD_binding_4 | 29.3 | 6.70e-07 | 90.7% | 47.7% |
| PF02719.22 | Polysacc_synt_2 | 42.7 | 5.60e-11 | 82.6% | 31.7% |
| PF16363.12 | GDP_Man_Dehyd | 47.2 | 3.10e-12 | 81.4% | 33.7% |
| PF01073.26 | 3Beta_HSD | 24.7 | 1.60e-05 | 73.3% | 38.9% |
D2
medium
residues 150-182_210-280
Domain cluster:
rep: IMGVR_UViG_3300025314_001605-3300025314-Ga0209323_100081116__D135-168_198-236_254-274
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04321.24 best | RmlD_sub_bind | 32.6 | 6.30e-08 | 67.3% | 16.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u9cC02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.90 | 65.0 | 7.51e-01 | 89.4% | 100.0% |
| 3sc6A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.89 | 64.0 | 7.43e-01 | 89.4% | 100.0% |
| 1kc0A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.86 | 80.0 | 5.58e-01 | 98.1% | 48.0% |
| 4wpgA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.86 | 62.0 | 7.14e-01 | 91.3% | 100.0% |
| 6dntA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.74 | 65.0 | 6.49e-01 | 95.2% | 98.1% |
| 1gy8B01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.74 | 65.0 | 6.15e-01 | 96.2% | 96.8% |
| 6bwlA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.73 | 64.0 | 6.38e-01 | 95.2% | 98.1% |
| 6wjaA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 63.0 | 6.30e-01 | 93.3% | 100.0% |
| 6kv9A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 63.0 | 6.36e-01 | 95.2% | 98.1% |
| 3rucA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 62.0 | 6.33e-01 | 96.2% | 94.1% |
| 4j2oA02 | 3.90.25.30 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain | 0.72 | 61.0 | 6.30e-01 | 97.1% | 97.9% |
| 1ek6A01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 64.0 | 5.97e-01 | 97.1% | 95.2% |
| 4e5yD02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 59.0 | 6.03e-01 | 96.2% | 94.0% |
| 7o71E01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 61.0 | 4.28e-01 | 95.2% | 45.5% |
| 4lw8A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.69 | 54.0 | 5.84e-01 | 94.2% | 100.0% |
| 2pk3A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.69 | 57.0 | 6.04e-01 | 93.3% | 100.0% |
| 3eheA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.67 | 57.0 | 5.93e-01 | 96.2% | 100.0% |
| 1n7hB01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.67 | 53.0 | 5.44e-01 | 93.3% | 87.1% |
| 3i6iA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.65 | 56.0 | 5.39e-01 | 94.2% | 97.4% |
| 3vsjA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.57 | 40.0 | 3.02e-01 | 74.0% | 87.0% |
| 3vsjD00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.54 | 41.0 | 3.02e-01 | 81.7% | 57.2% |
| 1d4aA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 40.0 | 3.03e-01 | 81.7% | 79.1% |
| 3cqjA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 35.0 | 2.62e-01 | 70.2% | 32.6% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 3.14e-01 | 76.0% | 95.0% |
| 4ydsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 39.0 | 3.08e-01 | 83.7% | 93.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.91 | 84.0 | 5.87e-01 | 96.2% | 46.3% | |
| 4946750 | 2003.1.1.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind | 0.90 | 83.0 | 5.84e-01 | 97.1% | 46.4% |
| None | — | 0.89 | 83.0 | 5.78e-01 | 97.1% | 45.9% | |
| 1936673 | 2003.1.1.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind | 0.89 | 81.0 | 5.65e-01 | 95.2% | 46.0% |
| 4996832 | 2003.1.1.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind | 0.88 | 83.0 | 5.82e-01 | 99.0% | 48.2% |
| 2993855 | 2003.1.1.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind | 0.87 | 80.0 | 5.60e-01 | 96.2% | 45.1% |
| 5044225 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.58 | 36.0 | 3.02e-01 | 72.1% | 36.1% |
| 3164056 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.57 | 39.0 | 2.99e-01 | 71.2% | 89.4% |
| 1495352 | 2007.2.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 | 0.54 | 42.0 | 3.42e-01 | 81.7% | 99.5% |
| 4110529 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 38.0 | 3.06e-01 | 72.1% | 69.3% |
| 5058337 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.54 | 43.0 | 3.85e-01 | 89.4% | 81.9% |
| 3225168 | 2011.4.1.2 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › PgaPase_1 | 0.51 | 38.0 | 3.10e-01 | 78.8% | 96.2% |
| 3909884 | 2007.2.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 | 0.51 | 38.0 | 2.87e-01 | 79.8% | 81.8% |
| 3938516 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.51 | 44.0 | 3.08e-01 | 96.2% | 73.1% |
| 4125316 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.51 | 43.0 | 3.27e-01 | 95.2% | 86.3% |
| 3966365 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 38.0 | 2.89e-01 | 78.8% | 94.4% |
| 3217570 | 7512.1.1.85 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT, Glyco_tran_28_C | 0.51 | 38.0 | 2.53e-01 | 80.8% | 93.6% |