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OP620778.1__WGN97640.1__X__00226

Bact-Vir

OP620778.1__WGN97640.1__X__00226

Identity

Accession:
OP620778 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Bertelyvirus_sp.

TaxID: 2832595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-91
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.77 40.0 3.81e-01 81.8% 44.4%
3chtA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.68 48.0 3.21e-01 76.6% 18.9%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.66 50.0 4.69e-01 80.5% 71.6%
1jqkA03 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 52.0 3.97e-01 88.3% 96.0%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 49.0 4.57e-01 81.8% 95.8%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 42.0 4.69e-01 77.9% 89.7%
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 51.0 3.72e-01 90.9% 71.4%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 43.0 3.94e-01 70.1% 67.3%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 46.0 3.62e-01 79.2% 100.0%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 47.0 4.05e-01 81.8% 73.3%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 46.0 3.25e-01 84.4% 87.8%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.60 38.0 3.53e-01 92.2% 51.6%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 48.0 4.37e-01 88.3% 99.0%
3ungC04 1.20.120.1260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle 0.59 40.0 3.72e-01 70.1% 64.9%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.57 43.0 3.74e-01 81.8% 79.8%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 39.0 4.25e-01 76.6% 100.0%
7xpcA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.65e-01 76.6% 23.8%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.54 32.0 3.21e-01 83.1% 57.0%
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.53 36.0 3.39e-01 85.7% 54.5%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 36.0 3.20e-01 72.7% 64.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3672772 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.87 36.0 3.83e-01 79.2% 45.7%
4157142 150.5.1.7 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 0.81 44.0 3.80e-01 81.8% 37.4%
3524685 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 60.0 4.74e-01 92.2% 51.0%
3840952 601.19.1.39 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.68 42.0 4.25e-01 92.2% 62.7%
3771372 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.68 60.0 4.40e-01 96.1% 42.1%
3685214 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.67 48.0 4.67e-01 75.3% 90.6%
3608012 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.65 41.0 3.95e-01 75.3% 57.6%
3607678 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 47.0 3.65e-01 77.9% 38.7%
4028008 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 52.0 3.77e-01 97.4% 50.7%
3249191 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 43.0 3.10e-01 77.9% 50.7%
3610039 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.57 40.0 3.26e-01 74.0% 46.5%
3725843 144.1.1.5 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PLAC8 0.56 39.0 3.45e-01 71.4% 53.6%
3303977 632.7.1.54 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF3490 0.55 41.0 3.33e-01 80.5% 42.0%
3257764 192.29.1.171 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sas10_Utp3 0.54 41.0 3.71e-01 85.7% 90.4%