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OP620778.1__WGN97647.1__X__00233

Bact-Vir

OP620778.1__WGN97647.1__X__00233

Identity

Accession:
OP620778 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Bertelyvirus_sp.

TaxID: 2832595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-74
PDB
Domain cluster: rep: S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00103__D53-127
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 68.0 6.54e-01 100.0% 89.7%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 6.68e-01 98.3% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 6.16e-01 100.0% 87.1%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.66e-01 100.0% 82.6%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 60.0 5.86e-01 95.0% 89.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 61.0 5.95e-01 100.0% 92.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.75e-01 100.0% 90.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.16e-01 100.0% 77.8%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.69e-01 91.7% 98.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.34e-01 100.0% 83.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.62e-01 100.0% 94.9%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.19e-01 100.0% 73.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.38e-01 100.0% 90.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.04e-01 100.0% 91.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.51e-01 100.0% 91.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.59e-01 100.0% 93.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.19e-01 100.0% 80.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.30e-01 100.0% 81.4%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 4.80e-01 100.0% 64.3%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.07e-01 96.7% 72.7%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.63e-01 100.0% 96.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.72e-01 100.0% 85.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.47e-01 100.0% 90.9%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.12e-01 100.0% 91.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.62e-01 100.0% 72.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.64e-01 96.7% 78.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.70e-01 100.0% 72.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.86e-01 100.0% 83.9%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.62 39.0 3.15e-01 83.3% 33.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.06e-01 100.0% 88.1%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.46e-01 100.0% 91.5%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.51e-01 100.0% 71.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 3.93e-01 95.0% 72.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.84e-01 98.3% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 3.77e-01 98.3% 48.0%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.69e-01 93.3% 91.9%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 3.99e-01 100.0% 74.6%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.85e-01 95.0% 96.7%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.77e-01 98.3% 86.1%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.55 43.0 3.69e-01 86.7% 83.0%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 3.91e-01 100.0% 81.4%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.45e-01 91.7% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.53 44.0 4.43e-01 100.0% 93.7%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 37.0 3.61e-01 76.7% 83.6%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 40.0 3.25e-01 85.0% 87.3%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 41.0 3.50e-01 95.0% 77.6%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.50 35.0 3.66e-01 91.7% 83.3%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 68.0 6.53e-01 100.0% 87.1%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 68.0 6.50e-01 100.0% 97.1%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 67.0 6.72e-01 98.3% 100.0%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.76 68.0 6.18e-01 100.0% 76.2%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.75 66.0 6.27e-01 100.0% 88.6%
4127826 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 64.0 6.27e-01 98.3% 93.8%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 65.0 6.35e-01 100.0% 96.9%
4537356 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 63.0 6.36e-01 96.7% 100.0%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.72 55.0 4.60e-01 100.0% 49.0%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.72 50.0 5.36e-01 100.0% 88.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.72 50.0 4.30e-01 100.0% 46.3%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.23e-01 100.0% 81.8%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 61.0 5.94e-01 100.0% 97.1%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.71 50.0 5.21e-01 100.0% 81.8%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 49.0 3.39e-01 100.0% 21.4%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.69e-01 100.0% 89.2%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.69 50.0 5.30e-01 100.0% 88.5%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.44e-01 100.0% 85.0%
2410170 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 59.0 5.82e-01 98.3% 93.7%
3621642 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 56.0 5.18e-01 100.0% 70.0%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.48e-01 100.0% 86.7%
3224981 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.52e-01 100.0% 91.7%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 48.0 4.10e-01 100.0% 45.0%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 55.0 5.33e-01 100.0% 80.0%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.55e-01 100.0% 91.7%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 57.0 5.05e-01 100.0% 63.7%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.58e-01 100.0% 84.3%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 56.0 5.37e-01 100.0% 82.9%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 56.0 4.95e-01 100.0% 63.3%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 48.0 5.10e-01 100.0% 92.0%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 54.0 5.18e-01 100.0% 78.6%
3513923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.15e-01 100.0% 74.7%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 56.0 5.39e-01 100.0% 82.9%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.63e-01 100.0% 96.7%
3569289 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.66 58.0 5.30e-01 100.0% 81.2%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 54.0 5.43e-01 100.0% 94.9%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.81e-01 100.0% 81.8%
3218194 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 5.23e-01 100.0% 78.7%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 57.0 5.71e-01 100.0% 98.3%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.36e-01 100.0% 80.0%
3573620 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.65 50.0 5.03e-01 93.3% 88.3%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 50.0 5.08e-01 100.0% 85.0%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.35e-01 100.0% 89.2%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 53.0 4.73e-01 100.0% 64.0%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.18e-01 100.0% 82.9%
503 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 51.0 4.97e-01 100.0% 82.1%
3410486 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.63 52.0 4.19e-01 96.7% 76.2%
165220 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 51.0 4.90e-01 100.0% 78.1%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.25e-01 100.0% 59.0%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.83e-01 100.0% 82.5%
2003 12.2.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.62 39.0 3.16e-01 83.3% 33.6%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.62 53.0 4.97e-01 100.0% 86.7%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.62 52.0 4.85e-01 100.0% 81.2%
3921576 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 50.0 3.98e-01 96.7% 73.6%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 48.0 4.77e-01 100.0% 81.5%
3895155 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 51.0 4.76e-01 100.0% 75.0%
403788 4.1.1.100 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_11 0.60 49.0 4.85e-01 100.0% 85.7%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.60 47.0 4.19e-01 100.0% 58.9%
3263955 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 3.95e-01 96.7% 78.3%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.59 47.0 4.62e-01 100.0% 81.5%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.58 45.0 4.40e-01 100.0% 77.5%
5014865 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.87e-01 95.0% 80.9%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.61e-01 100.0% 85.3%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.57e-01 100.0% 90.0%
3602243 331.1.1.25 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF1894 0.57 44.0 3.97e-01 85.0% 95.3%
2775138 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 43.0 3.35e-01 100.0% 34.4%
4994614 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 47.0 3.84e-01 100.0% 69.6%
4948685 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 46.0 3.92e-01 100.0% 77.0%
4931033 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 46.0 3.80e-01 100.0% 69.6%
4458765 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 46.0 3.80e-01 100.0% 69.6%
5000207 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.56 46.0 3.79e-01 100.0% 69.6%
1140106 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 3.91e-01 100.0% 81.4%
4960211 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.55 44.0 3.97e-01 100.0% 87.4%
4638794 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.53 44.0 3.64e-01 100.0% 69.6%
5035527 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.53 44.0 3.75e-01 100.0% 79.1%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.96e-01 100.0% 78.6%
4970754 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.53 44.0 3.63e-01 100.0% 66.7%
4497415 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.52 42.0 3.52e-01 100.0% 64.0%
4015751 1129.1.1.0 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit 0.51 41.0 3.13e-01 91.7% 48.0%