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OP620778.1__WGN97807.1__X__00393
Bact-VirOP620778.1__WGN97807.1__X__00393
Identity
- Accession:
- OP620778 ↗
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Taxonomy
TaxID: 2832595
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-87
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 56.0 | 4.06e-01 | 81.4% | 46.2% |
| 2oa2A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 43.0 | 3.53e-01 | 75.7% | 33.9% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 45.0 | 3.61e-01 | 70.0% | 34.1% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.68 | 51.0 | 5.38e-01 | 82.9% | 88.9% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 40.0 | 3.49e-01 | 74.3% | 39.6% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 43.0 | 3.92e-01 | 70.0% | 50.0% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.67 | 53.0 | 4.81e-01 | 87.1% | 85.3% |
| 1gsoA04 | 3.90.600.10 | Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain | 0.64 | 44.0 | 4.05e-01 | 71.4% | 97.8% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.64 | 47.0 | 3.90e-01 | 78.6% | 69.8% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 42.0 | 2.94e-01 | 70.0% | 67.9% |
| 1eu3A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 44.0 | 3.75e-01 | 74.3% | 83.6% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 44.0 | 2.83e-01 | 74.3% | 28.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 41.0 | 3.78e-01 | 71.4% | 55.4% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 40.0 | 3.57e-01 | 70.0% | 47.6% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 4.29e-01 | 81.4% | 82.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 41.0 | 3.71e-01 | 71.4% | 54.3% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.59 | 44.0 | 3.76e-01 | 80.0% | 86.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.59 | 40.0 | 3.10e-01 | 71.4% | 30.5% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 45.0 | 4.21e-01 | 88.6% | 90.3% |
| 1tdjA03 | 3.40.1020.10 | Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 | 0.58 | 50.0 | 3.85e-01 | 97.1% | 90.7% |
| 4zxeC00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 39.0 | 3.20e-01 | 74.3% | 36.0% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.58 | 44.0 | 3.39e-01 | 84.3% | 74.9% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 41.0 | 3.31e-01 | 78.6% | 40.0% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.05e-01 | 94.3% | 92.6% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 4.38e-01 | 80.0% | 100.0% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 39.0 | 3.69e-01 | 72.9% | 64.8% |
| 4pqqA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 39.0 | 3.07e-01 | 72.9% | 34.6% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 46.0 | 4.36e-01 | 94.3% | 75.3% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.53e-01 | 77.1% | 58.2% |
| 5f7pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 38.0 | 3.29e-01 | 71.4% | 56.9% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.56 | 40.0 | 2.85e-01 | 78.6% | 63.6% |
| 2vf7B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 38.0 | 2.63e-01 | 72.9% | 84.5% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 38.0 | 3.27e-01 | 72.9% | 49.6% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 37.0 | 3.50e-01 | 71.4% | 78.9% |
| 4jrfA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 3.11e-01 | 82.9% | 35.4% |
| 3hzbC00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.54 | 34.0 | 3.22e-01 | 74.3% | 50.0% |
| 1e4eB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 39.0 | 3.03e-01 | 98.6% | 34.6% |
| 2vzwB00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 45.0 | 3.60e-01 | 95.7% | 80.5% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 44.0 | 4.10e-01 | 92.9% | 100.0% |
| 3enuA00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.53 | 34.0 | 2.98e-01 | 75.7% | 39.5% |
| 1xhnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 38.0 | 3.11e-01 | 85.7% | 74.7% |
| 3nwgA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.51 | 39.0 | 3.56e-01 | 84.3% | 86.1% |
| 3r5lA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.58e-01 | 91.4% | 56.9% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.51 | 37.0 | 3.33e-01 | 77.1% | 81.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119284 | 3115.2.1.1 ↗ | a+b two layers › GP2-like › GP2 › GP2 › RNA_pol_inhib | 0.79 | 55.0 | 5.93e-01 | 77.1% | 86.4% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.76 | 51.0 | 5.82e-01 | 81.4% | 98.0% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.75 | 51.0 | 5.79e-01 | 75.7% | 98.0% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.73 | 51.0 | 5.53e-01 | 72.9% | 98.3% |
| 4929060 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.72 | 52.0 | 4.60e-01 | 75.7% | 77.0% |
| 4976641 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.72 | 50.0 | 4.89e-01 | 71.4% | 97.3% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.72 | 45.0 | 5.32e-01 | 70.0% | 97.8% |
| 1318645 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.72 | 55.0 | 4.81e-01 | 81.4% | 81.6% |
| 4311079 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.71 | 54.0 | 4.83e-01 | 81.4% | 85.9% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.71 | 48.0 | 5.43e-01 | 72.9% | 100.0% |
| 5021947 | 304.4.1.75 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD | 0.70 | 50.0 | 4.41e-01 | 77.1% | 83.8% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 52.0 | 5.43e-01 | 81.4% | 95.3% |
| 5072246 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.69 | 53.0 | 4.89e-01 | 82.9% | 91.1% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.68 | 46.0 | 4.93e-01 | 70.0% | 81.7% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 55.0 | 5.41e-01 | 91.4% | 88.0% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 54.0 | 4.85e-01 | 91.4% | 68.3% |
| 4938024 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.66 | 46.0 | 3.92e-01 | 74.3% | 44.2% |
| 3281849 | 303.1.1.3 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 | 0.66 | 52.0 | 4.48e-01 | 87.1% | 92.9% |
| 4597118 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 44.0 | 4.03e-01 | 70.0% | 92.6% |
| 4819450 | 110.1.1.5 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CENP-N | 0.66 | 53.0 | 4.24e-01 | 88.6% | 88.5% |
| 3386827 | 304.8.1.3 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NapD | 0.65 | 45.0 | 4.11e-01 | 72.9% | 75.8% |
| 4985253 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.64 | 46.0 | 4.17e-01 | 77.1% | 81.0% |
| 4654177 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.63 | 54.0 | 3.79e-01 | 100.0% | 83.7% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.62 | 54.0 | 3.82e-01 | 100.0% | 81.3% |
| 4984065 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 47.0 | 4.08e-01 | 82.9% | 73.6% |
| 3915011 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.61 | 46.0 | 3.58e-01 | 81.4% | 58.7% |
| 5046350 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 44.0 | 3.98e-01 | 78.6% | 80.0% |
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.60 | 49.0 | 4.38e-01 | 94.3% | 63.8% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.59 | 51.0 | 3.60e-01 | 100.0% | 82.8% |
| 4998579 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 2.96e-01 | 72.9% | 48.2% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 48.0 | 4.53e-01 | 95.7% | 81.8% |
| 2771923 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.58 | 41.0 | 3.72e-01 | 74.3% | 67.4% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.58 | 40.0 | 3.94e-01 | 72.9% | 69.3% |
| None | — | 0.58 | 40.0 | 3.69e-01 | 74.3% | 77.9% | |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.58 | 45.0 | 3.81e-01 | 85.7% | 91.7% |
| 4040528 | 304.24.1.16 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA | 0.57 | 43.0 | 4.04e-01 | 85.7% | 96.7% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.55 | 38.0 | 3.05e-01 | 72.9% | 50.7% |
| 4043242 | 304.6.1.5 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Cytokin-bind | 0.54 | 47.0 | 3.30e-01 | 100.0% | 82.5% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.54 | 37.0 | 3.14e-01 | 71.4% | 86.7% |
| 5008102 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.54 | 37.0 | 3.33e-01 | 71.4% | 99.0% |
| 3923043 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.53 | 38.0 | 3.47e-01 | 78.6% | 80.0% |