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OP620778.1__WGN97879.1__X__00465
Bact-VirOP620778.1__WGN97879.1__X__00465
Identity
- Accession:
- OP620778 ↗
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Taxonomy
TaxID: 2832595
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-52
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 49.0 | 4.21e-01 | 73.1% | 47.5% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 48.0 | 4.99e-01 | 73.1% | 83.7% |
| 3s6pB01 | 1.20.1690.20 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › | 0.69 | 48.0 | 3.94e-01 | 82.7% | 40.0% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 47.0 | 3.83e-01 | 73.1% | 48.9% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 50.0 | 4.25e-01 | 80.8% | 81.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 48.0 | 4.13e-01 | 73.1% | 52.6% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.67 | 45.0 | 4.09e-01 | 80.8% | 53.7% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.66 | 57.0 | 3.65e-01 | 98.1% | 64.2% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 49.0 | 3.52e-01 | 84.6% | 28.3% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 48.0 | 4.13e-01 | 78.8% | 77.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 45.0 | 3.96e-01 | 73.1% | 49.4% |
| 2hxoA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 44.0 | 3.20e-01 | 90.4% | 26.4% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.63 | 52.0 | 3.66e-01 | 94.2% | 90.5% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 45.0 | 4.54e-01 | 82.7% | 76.5% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.62 | 46.0 | 3.34e-01 | 84.6% | 69.9% |
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 47.0 | 3.05e-01 | 84.6% | 21.1% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 43.0 | 3.47e-01 | 75.0% | 38.2% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 46.0 | 4.26e-01 | 80.8% | 70.3% |
| 3ecqA07 | 6.10.140.660 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 40.0 | 4.32e-01 | 73.1% | 82.2% |
| 7dd9A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.59 | 44.0 | 2.77e-01 | 80.8% | 84.5% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 44.0 | 4.12e-01 | 98.1% | 66.2% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.57 | 47.0 | 3.84e-01 | 100.0% | 49.1% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.57 | 45.0 | 3.33e-01 | 90.4% | 82.5% |
| 6bz0D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 48.0 | 3.19e-01 | 100.0% | 28.3% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.55 | 44.0 | 3.75e-01 | 88.5% | 55.7% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.55 | 44.0 | 4.00e-01 | 86.5% | 67.6% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.55 | 48.0 | 3.65e-01 | 96.2% | 94.0% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.36e-01 | 100.0% | 39.4% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 41.0 | 3.96e-01 | 82.7% | 73.3% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.53 | 43.0 | 3.12e-01 | 94.2% | 42.9% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.53 | 47.0 | 3.19e-01 | 100.0% | 39.4% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.53 | 48.0 | 3.51e-01 | 100.0% | 55.6% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.52 | 45.0 | 3.10e-01 | 96.2% | 91.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729821 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.86 | 76.0 | 5.37e-01 | 100.0% | 34.2% |
| 3607341 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.81 | 70.0 | 4.27e-01 | 100.0% | 15.7% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.72 | 50.0 | 3.93e-01 | 73.1% | 76.2% |
| 4944233 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.71 | 49.0 | 4.46e-01 | 73.1% | 54.3% |
| 3618461 | 632.22.1.29 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › 7tm_1 | 0.71 | 50.0 | 3.98e-01 | 75.0% | 76.9% |
| 4030617 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.71 | 42.0 | 3.78e-01 | 90.4% | 44.3% |
| 4000037 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.70 | 49.0 | 4.65e-01 | 73.1% | 80.0% |
| 3785168 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.70 | 50.0 | 3.95e-01 | 75.0% | 98.0% |
| 3595063 | 192.8.1.343 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C | 0.70 | 49.0 | 4.50e-01 | 73.1% | 84.6% |
| 3455776 | 109.23.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › TPR_PATROL1 | 0.69 | 44.0 | 3.89e-01 | 76.9% | 46.7% |
| 3171363 | 605.8.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 | 0.69 | 48.0 | 4.71e-01 | 73.1% | 81.8% |
| 3705139 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 47.0 | 3.39e-01 | 73.1% | 26.9% |
| 3314379 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.67 | 56.0 | 5.10e-01 | 96.2% | 70.0% |
| 5029796 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.67 | 46.0 | 3.51e-01 | 73.1% | 43.3% |
| 3780547 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 49.0 | 3.82e-01 | 82.7% | 55.0% |
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 52.0 | 4.58e-01 | 88.5% | 80.0% |
| 3270040 | 101.1.16.0 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain | 0.64 | 51.0 | 4.48e-01 | 100.0% | 58.7% |
| 3195747 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.63 | 51.0 | 4.67e-01 | 90.4% | 72.9% |
| 3389275 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.63 | 55.0 | 4.61e-01 | 100.0% | 57.8% |
| 3787150 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.62 | 43.0 | 3.41e-01 | 73.1% | 49.5% |
| 3564496 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 43.0 | 3.06e-01 | 73.1% | 26.7% |
| 3818822 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.61 | 47.0 | 3.45e-01 | 90.4% | 51.9% |
| 3578099 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.61 | 49.0 | 4.89e-01 | 92.3% | 85.5% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.60 | 45.0 | 3.57e-01 | 80.8% | 48.6% |
| 3970898 | 6119.1.1.0 ↗ | alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB | 0.60 | 44.0 | 4.48e-01 | 80.8% | 82.0% |
| 3508526 | 180.1.1.6 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT | 0.60 | 51.0 | 3.38e-01 | 100.0% | 60.8% |
| 3363819 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.59 | 40.0 | 2.99e-01 | 88.5% | 29.6% |
| 3251975 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.59 | 48.0 | 4.33e-01 | 88.5% | 71.4% |
| 3386452 | 5050.1.1.21 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 | 0.59 | 47.0 | 3.50e-01 | 90.4% | 57.2% |
| 5064397 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.58 | 45.0 | 3.02e-01 | 82.7% | 95.9% |
| 2100896 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.57 | 50.0 | 4.62e-01 | 98.1% | 80.6% |
| 5074223 | 622.5.1.0 ↗ | alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 | 0.57 | 48.0 | 4.10e-01 | 98.1% | 56.7% |
| 5017280 | 2002.1.1.172 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C | 0.57 | 48.0 | 3.06e-01 | 100.0% | 74.1% |
| 3587655 | 829.1.1.0 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB | 0.57 | 49.0 | 4.39e-01 | 98.1% | 85.3% |
| 3355320 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.57 | 49.0 | 4.28e-01 | 98.1% | 80.0% |
| 3919989 | 192.5.1.19 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA | 0.56 | 46.0 | 4.16e-01 | 100.0% | 68.8% |
| 4206404 | 103.4.1.26 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding | 0.56 | 45.0 | 3.84e-01 | 96.2% | 54.7% |
| 3940232 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 41.0 | 3.32e-01 | 80.8% | 61.9% |
| 4367294 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.55 | 40.0 | 4.00e-01 | 80.8% | 74.1% |
| 3390239 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.54 | 44.0 | 4.08e-01 | 88.5% | 92.3% |
| 3476412 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 46.0 | 4.32e-01 | 98.1% | 96.9% |
| 3670246 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 38.0 | 3.52e-01 | 80.8% | 80.0% |
| 3738026 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.53 | 39.0 | 3.72e-01 | 82.7% | 90.8% |
| 4534734 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.52 | 47.0 | 3.53e-01 | 100.0% | 88.8% |
| 3579266 | 5055.1.1.11 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N | 0.51 | 45.0 | 4.00e-01 | 100.0% | 94.7% |
D2
high
residues 59-165
D3
medium
residues 176-263