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OP626800.1__WHS04314.1__X__00029

Bact-Vir

OP626800.1__WHS04314.1__X__00029

Identity

Accession:
OP626800 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PseuP_222

TaxID: 3043421

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 3.89e-01 92.5% 66.7%
3wscA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.58 42.0 2.91e-01 77.6% 93.6%
3stoA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.58 50.0 3.52e-01 97.0% 81.2%
3w5mA05 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 43.0 2.81e-01 86.6% 19.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.72e-01 89.6% 86.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029257 327.6.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › NifU 0.68 44.0 4.15e-01 91.0% 55.0%
3204423 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 35.0 3.70e-01 86.6% 58.3%
5037107 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.96e-01 89.6% 61.3%
3963648 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 44.0 3.04e-01 79.1% 81.3%
3704221 2004.1.1.141 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.59 46.0 3.40e-01 88.1% 30.8%
3735556 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 35.0 3.18e-01 76.1% 45.3%
3510618 148.1.1.6 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID-31kDa 0.55 37.0 3.16e-01 71.6% 47.0%
5013701 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.54 45.0 3.93e-01 94.0% 93.3%
4032512 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.50 32.0 3.07e-01 88.1% 53.8%
D2 medium residues 68-154
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jnbA01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.60 51.0 3.93e-01 94.3% 55.7%
3psfA02 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.59 45.0 3.80e-01 80.5% 64.6%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 35.0 3.41e-01 89.7% 52.5%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.56 40.0 4.05e-01 97.7% 76.7%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.55 38.0 3.98e-01 94.3% 77.8%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.54 45.0 4.29e-01 94.3% 89.6%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.18e-01 89.7% 97.5%
1wyrA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.53 37.0 3.33e-01 72.4% 66.9%
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.53 41.0 2.84e-01 95.4% 23.9%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 43.0 3.16e-01 100.0% 50.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272544 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.58 50.0 4.01e-01 100.0% 73.7%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.58 38.0 3.85e-01 92.0% 67.1%
3738440 6088.1.1.0 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A 0.55 37.0 3.70e-01 95.4% 66.7%
4013825 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 42.0 4.49e-01 95.4% 97.3%
4517192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 44.0 3.54e-01 95.4% 68.9%
3292715 102.1.2.3 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Adenine_glyco 0.53 36.0 3.36e-01 71.3% 75.7%
3482861 3361.1.1.6 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › L27_1 0.52 42.0 4.18e-01 97.7% 83.3%
3456706 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 38.0 3.95e-01 93.1% 86.3%
4999590 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.51 44.0 3.37e-01 100.0% 83.6%