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OP626800.1__WHS04315.1__X__00030

Bact-Vir

OP626800.1__WHS04315.1__X__00030

Identity

Accession:
OP626800 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-70
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.73 59.0 5.76e-01 98.3% 79.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 53.0 4.38e-01 100.0% 43.7%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.72 65.0 5.06e-01 100.0% 94.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 54.0 4.23e-01 100.0% 39.7%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.69 60.0 4.71e-01 100.0% 96.1%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.69 60.0 4.70e-01 100.0% 96.9%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.68 48.0 3.51e-01 75.9% 55.3%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.67 59.0 4.67e-01 100.0% 53.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 45.0 4.10e-01 70.7% 97.5%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.67 45.0 4.05e-01 70.7% 93.9%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 50.0 3.48e-01 82.8% 64.5%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.00e-01 100.0% 37.8%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 46.0 3.38e-01 75.9% 66.7%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 45.0 3.41e-01 75.9% 72.2%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 52.0 4.06e-01 100.0% 41.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 44.0 3.58e-01 75.9% 75.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 50.0 4.69e-01 98.3% 73.2%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.03e-01 100.0% 46.5%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.60 40.0 3.75e-01 84.5% 56.3%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 52.0 3.43e-01 100.0% 93.2%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.58e-01 96.6% 45.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 4.47e-01 93.1% 73.5%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 49.0 3.53e-01 100.0% 82.8%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.58 50.0 4.38e-01 98.3% 86.4%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.58 47.0 3.72e-01 91.4% 71.1%
3dghA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.57 47.0 3.80e-01 93.1% 80.0%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 44.0 3.29e-01 86.2% 96.8%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 36.0 3.50e-01 82.8% 58.7%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 48.0 4.49e-01 96.6% 75.7%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.43e-01 96.6% 42.6%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.95e-01 100.0% 54.8%
3t7yA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.54 40.0 3.53e-01 89.7% 51.1%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.70e-01 87.9% 29.2%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.43e-01 96.6% 70.8%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.49e-01 98.3% 79.9%
2hqyA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 2.81e-01 79.3% 60.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.84e-01 100.0% 98.8%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.81e-01 96.6% 51.7%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.52 37.0 3.70e-01 93.1% 74.6%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 43.0 3.60e-01 100.0% 80.7%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.50 45.0 3.15e-01 100.0% 54.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3327654 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.79 66.0 6.04e-01 100.0% 70.7%
3671921 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.77 58.0 5.96e-01 94.8% 83.6%
3335785 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.72 59.0 5.67e-01 100.0% 78.5%
4461189 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.72 63.0 4.94e-01 100.0% 99.2%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 57.0 4.87e-01 93.1% 56.7%
5061777 206.1.3.2 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.70 50.0 3.32e-01 75.9% 48.1%
4945379 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.69 61.0 4.79e-01 100.0% 98.4%
3736626 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.69 62.0 4.74e-01 100.0% 52.3%
3287567 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.69 44.0 3.80e-01 70.7% 42.2%
3601880 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.69 59.0 4.60e-01 100.0% 43.8%
3671924 4325.1.1.12 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › AP2 0.66 43.0 4.71e-01 79.3% 97.4%
4927398 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 56.0 4.10e-01 100.0% 35.5%
3941423 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.66 56.0 5.00e-01 100.0% 67.1%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 51.0 4.02e-01 98.3% 39.2%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.65 54.0 4.49e-01 100.0% 51.4%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 58.0 5.30e-01 100.0% 86.7%
3492441 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 53.0 4.85e-01 98.3% 69.3%
4338151 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.64 54.0 4.04e-01 94.8% 38.6%
3997451 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.63 44.0 3.35e-01 75.9% 56.6%
5004057 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.63 44.0 3.19e-01 74.1% 95.2%
4975598 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.62 53.0 3.43e-01 100.0% 61.0%
5065350 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 4.35e-01 100.0% 55.8%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.62 45.0 3.19e-01 77.6% 73.7%
5039970 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.61 49.0 2.94e-01 87.9% 17.9%
3937468 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.87e-01 98.3% 45.5%
3947188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 42.0 3.43e-01 75.9% 40.0%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 51.0 3.95e-01 100.0% 42.3%
3684699 7516.1.1.41 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase 0.60 48.0 2.82e-01 89.7% 12.8%
3868717 220.1.1.173 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.60 51.0 4.06e-01 96.6% 50.8%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 52.0 4.21e-01 98.3% 60.9%
3995314 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 3.98e-01 100.0% 43.7%
4122019 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.58 44.0 3.67e-01 96.6% 44.3%
3225873 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.58 46.0 2.81e-01 86.2% 94.3%
3711119 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 41.0 3.34e-01 77.6% 86.1%
3977405 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.57 47.0 4.08e-01 100.0% 59.0%
3934476 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 3.86e-01 100.0% 53.3%
3983402 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.57 46.0 4.53e-01 98.3% 100.0%
3593375 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.58e-01 96.6% 100.0%
3476540 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.56 45.0 3.70e-01 94.8% 80.0%
3457412 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 46.0 3.00e-01 93.1% 20.7%
3850820 327.11.2.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.56 48.0 3.69e-01 94.8% 80.8%
3986557 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.56 46.0 3.83e-01 100.0% 77.4%
4927342 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.97e-01 96.6% 86.7%
3913071 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.55 47.0 3.63e-01 100.0% 46.4%
3833570 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 46.0 3.04e-01 93.1% 86.3%
3170899 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 42.0 3.57e-01 94.8% 48.6%
4944869 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 3.23e-01 93.1% 37.7%
5071253 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.54 42.0 3.15e-01 84.5% 88.6%
4982022 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.53 42.0 3.20e-01 84.5% 91.5%
3952404 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.53 41.0 3.29e-01 96.6% 42.0%
3591097 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.79e-01 93.1% 21.1%
3275009 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 46.0 3.50e-01 100.0% 40.6%
4979901 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.52 38.0 3.65e-01 94.8% 67.1%
3224914 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 39.0 3.32e-01 100.0% 45.2%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 45.0 3.12e-01 96.6% 53.0%
3196233 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.19e-01 96.6% 65.8%
3173890 3991.1.1.2 alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C 0.51 45.0 3.22e-01 100.0% 46.9%
5037256 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 38.0 3.43e-01 86.2% 55.6%
4956002 2484.4.1.0 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.50 38.0 3.26e-01 89.7% 57.3%
3858468 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.50 38.0 2.72e-01 100.0% 23.6%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 44.0 3.08e-01 98.3% 53.0%