←Back to structures
OP628075.1__WAB24971.1__M3_0020__00019
Bact-VirOP628075.1__WAB24971.1__M3_0020__00019
Identity
- Accession:
- OP628075 ↗
- Kingdom:
- phage
Quality
62.4
mean pLDDT
Taxonomy
TaxID: 2995278
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-98
D2
medium
residues 99-155
Domain cluster:
rep: OL436246.1__UGL60846.1__X__00192__D177-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02839.20 best | CBM_5_12 | 28.5 | 1.70e-06 | 59.7% | 65.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.85 | 63.0 | 6.83e-01 | 100.0% | 93.8% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.83 | 67.0 | 5.57e-01 | 98.2% | 51.6% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.83 | 61.0 | 6.45e-01 | 100.0% | 88.2% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.81 | 61.0 | 5.62e-01 | 100.0% | 63.0% |
| 1ed7A00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.79 | 59.0 | 6.50e-01 | 94.7% | 100.0% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.67 | 58.0 | 5.74e-01 | 98.2% | 95.1% |
| 1aiwA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.66 | 57.0 | 5.56e-01 | 100.0% | 87.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 4.56e-01 | 98.2% | 73.0% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 34.0 | 3.12e-01 | 78.9% | 41.9% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.57 | 35.0 | 3.87e-01 | 89.5% | 78.3% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 36.0 | 2.43e-01 | 91.2% | 16.5% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.54 | 40.0 | 3.89e-01 | 87.7% | 95.7% |
| 1fbnA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 40.0 | 4.20e-01 | 93.0% | 92.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1322863 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.87 | 67.0 | 7.38e-01 | 94.7% | 100.0% |
| 5026481 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.87 | 64.0 | 6.80e-01 | 100.0% | 88.0% |
| 4110715 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.86 | 67.0 | 6.61e-01 | 96.5% | 79.7% |
| 1322862 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.85 | 67.0 | 7.23e-01 | 96.5% | 97.9% |
| 3971347 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.85 | 68.0 | 6.75e-01 | 98.2% | 82.8% |
| 3972100 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.85 | 64.0 | 6.15e-01 | 100.0% | 70.8% |
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.82 | 61.0 | 6.31e-01 | 100.0% | 83.3% |
| 4444075 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.82 | 59.0 | 6.65e-01 | 96.5% | 100.0% |
| 1291025 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.81 | 61.0 | 5.62e-01 | 100.0% | 63.0% |
| 1694867 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.80 | 65.0 | 6.76e-01 | 98.2% | 94.3% |
| 4233290 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.80 | 62.0 | 6.55e-01 | 100.0% | 96.0% |
| 4009007 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.78 | 60.0 | 6.36e-01 | 98.2% | 94.0% |
| 3976685 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.73 | 62.0 | 6.37e-01 | 100.0% | 98.1% |
| 4009008 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.72 | 61.0 | 6.26e-01 | 96.5% | 96.4% |
| 4307941 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.71 | 64.0 | 6.38e-01 | 98.2% | 98.3% |
| 4149799 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.71 | 57.0 | 6.05e-01 | 96.5% | 100.0% |
| 4558555 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.61 | 47.0 | 3.97e-01 | 86.0% | 58.0% |
| 3934136 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.57 | 49.0 | 3.51e-01 | 100.0% | 51.7% |
| 3818230 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.54 | 41.0 | 3.92e-01 | 87.7% | 70.8% |
| 2761575 | 51.1.1.2 ↗ | beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 | 0.54 | 40.0 | 3.90e-01 | 87.7% | 95.7% |
| 3949309 | 325.2.1.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Succinylglutamate desuccinylase / Aspartoacylase C-terminal domain › Succinylglutamate desuccinylase / Aspartoacylase C-terminal domain › AstE_AspA | 0.54 | 41.0 | 3.81e-01 | 86.0% | 74.7% |
| 5012905 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.35e-01 | 80.7% | 86.7% |
| 4982454 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.52 | 41.0 | 4.07e-01 | 94.7% | 83.3% |
D3
medium
residues 156-241