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OP628075.1__WAB25008.1__M3_0057__00056
Bact-VirOP628075.1__WAB25008.1__M3_0057__00056
Identity
- Accession:
- OP628075 ↗
- Kingdom:
- phage
Quality
95.1
mean pLDDT
Taxonomy
TaxID: 2995278
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.79 | 54.0 | 4.21e-01 | 71.7% | 36.7% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.77 | 53.0 | 4.74e-01 | 71.7% | 54.8% |
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.73 | 50.0 | 4.88e-01 | 71.7% | 73.7% |
| 7w01A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 62.0 | 4.11e-01 | 100.0% | 28.4% |
| 2be4A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 58.0 | 4.94e-01 | 92.5% | 72.7% |
| 2bl0B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 53.0 | 4.96e-01 | 96.2% | 66.2% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.67 | 55.0 | 4.39e-01 | 100.0% | 82.0% |
| 7osfB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 56.0 | 3.76e-01 | 100.0% | 28.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 51.0 | 4.51e-01 | 96.2% | 73.9% |
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 55.0 | 3.98e-01 | 98.1% | 50.9% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 3.91e-01 | 84.9% | 67.0% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.63 | 43.0 | 3.56e-01 | 71.7% | 90.8% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.63 | 46.0 | 2.87e-01 | 79.2% | 89.8% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 49.0 | 4.36e-01 | 94.3% | 58.5% |
| 6elqA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 42.0 | 2.94e-01 | 77.4% | 26.7% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 42.0 | 4.19e-01 | 94.3% | 76.4% |
| 2zbkA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 3.09e-01 | 71.7% | 41.3% |
| 1svmA01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.53 | 44.0 | 3.73e-01 | 94.3% | 56.7% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 45.0 | 3.67e-01 | 96.2% | 75.2% |
| 5zorA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 43.0 | 3.96e-01 | 96.2% | 69.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.51 | 42.0 | 3.69e-01 | 100.0% | 70.8% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.51 | 38.0 | 3.22e-01 | 81.1% | 53.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286638 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.86 | 59.0 | 4.02e-01 | 71.7% | 27.1% |
| 3704070 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.76 | 67.0 | 4.09e-01 | 100.0% | 29.8% |
| 3258173 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 49.0 | 4.86e-01 | 71.7% | 65.5% |
| 3870903 | 103.1.1.53 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th | 0.74 | 63.0 | 6.14e-01 | 100.0% | 86.7% |
| 3993593 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 62.0 | 5.77e-01 | 100.0% | 75.4% |
| 3388319 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.71 | 62.0 | 4.05e-01 | 100.0% | 41.7% |
| 3596843 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 55.0 | 4.54e-01 | 88.7% | 74.7% |
| 4209656 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 56.0 | 4.56e-01 | 96.2% | 70.5% |
| 3499902 | 181.1.1.12 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SCAF11-like_C | 0.66 | 56.0 | 5.11e-01 | 100.0% | 83.8% |
| 3563012 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.65 | 53.0 | 4.75e-01 | 96.2% | 68.8% |
| 4082273 | 148.1.3.324 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30824 | 0.65 | 53.0 | 4.12e-01 | 98.1% | 47.7% |
| 3491856 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.65 | 55.0 | 4.63e-01 | 100.0% | 85.3% |
| 3855039 | 3050.1.1.18 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › SCAF11-like_C | 0.65 | 55.0 | 4.73e-01 | 100.0% | 67.8% |
| 4876716 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.64 | 53.0 | 4.78e-01 | 100.0% | 67.6% |
| 3389399 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.64 | 53.0 | 4.41e-01 | 100.0% | 59.0% |
| 3893016 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 55.0 | 5.16e-01 | 96.2% | 84.6% |
| 3863452 | 108.1.1.107 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 | 0.62 | 54.0 | 4.56e-01 | 100.0% | 74.4% |
| 3761312 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 50.0 | 4.38e-01 | 100.0% | 65.6% |
| 3792321 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 53.0 | 4.54e-01 | 98.1% | 67.1% |
| 3483649 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.59 | 48.0 | 3.78e-01 | 92.5% | 51.3% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.58 | 48.0 | 4.42e-01 | 100.0% | 80.0% |
| 4518433 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.57 | 49.0 | 4.19e-01 | 100.0% | 81.1% |
| 3259872 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 41.0 | 2.68e-01 | 84.9% | 86.7% |
| 4309111 | 4321.1.1.3 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › PgdA_N | 0.52 | 42.0 | 2.90e-01 | 100.0% | 25.8% |
D2
medium
residues 54-139
Domain cluster:
rep: OP380492.1__UXR28907.1__X__00176__D70-144