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OP628075.1__WAB25105.1__M3_0154__00153

Bact-Vir

OP628075.1__WAB25105.1__M3_0154__00153

Identity

Accession:
OP628075 ↗
Kingdom:
phage

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-79
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.73 50.0 4.45e-01 70.9% 57.7%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.72 50.0 5.27e-01 72.2% 85.7%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.84e-01 73.4% 82.6%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.66e-01 78.5% 75.7%
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.67 49.0 4.96e-01 77.2% 85.7%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 49.0 5.11e-01 78.5% 94.4%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.66 48.0 5.12e-01 77.2% 100.0%
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.66 46.0 3.48e-01 73.4% 43.1%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.44e-01 70.9% 75.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.71e-01 88.6% 75.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 46.0 4.18e-01 73.4% 57.3%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.65 43.0 4.08e-01 73.4% 56.8%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 46.0 3.45e-01 75.9% 81.6%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.63e-01 77.2% 100.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 46.0 4.09e-01 75.9% 64.0%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 44.0 4.42e-01 72.2% 95.0%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.20e-01 74.7% 87.0%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.63 46.0 4.82e-01 77.2% 98.6%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.63 49.0 4.69e-01 86.1% 75.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.14e-01 77.2% 70.5%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.62 50.0 3.55e-01 89.9% 66.3%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.12e-01 78.5% 72.6%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 44.0 3.97e-01 75.9% 67.6%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.90e-01 72.2% 69.9%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 41.0 3.84e-01 72.2% 74.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 3.33e-01 81.0% 47.6%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 45.0 3.57e-01 79.7% 43.7%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 42.0 3.54e-01 73.4% 82.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.29e-01 79.7% 80.5%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 40.0 4.12e-01 73.4% 74.7%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.58 50.0 4.27e-01 100.0% 77.5%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.70e-01 70.9% 61.8%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.76e-01 79.7% 64.2%
6g0nA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 45.0 2.93e-01 86.1% 26.5%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.78e-01 70.9% 67.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.69e-01 72.2% 64.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.57 43.0 3.02e-01 83.5% 40.1%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.57 38.0 3.46e-01 70.9% 69.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.56 40.0 3.80e-01 77.2% 79.2%
8g3lE01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 40.0 3.12e-01 74.7% 91.6%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.86e-01 77.2% 74.4%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 38.0 3.33e-01 72.2% 56.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.83e-01 100.0% 65.4%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.65e-01 70.9% 95.3%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.96e-01 73.4% 97.1%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.58e-01 74.7% 65.3%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.51 37.0 2.94e-01 78.5% 74.4%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.39e-01 83.5% 82.7%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.48e-01 77.2% 93.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049729 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 5.81e-01 78.5% 97.3%
4995959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 5.14e-01 81.0% 70.0%
3879109 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.75 55.0 5.03e-01 77.2% 61.5%
3737998 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 52.0 5.14e-01 73.4% 77.6%
4019210 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 52.0 5.45e-01 73.4% 91.4%
3407611 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 52.0 5.30e-01 73.4% 84.0%
4361828 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 54.0 4.87e-01 77.2% 61.0%
3603717 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 50.0 4.99e-01 70.9% 77.5%
3740540 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 51.0 5.10e-01 73.4% 81.2%
3602137 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 49.0 4.65e-01 70.9% 73.7%
5010188 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.72 50.0 5.28e-01 73.4% 81.4%
3271317 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 65.0 6.09e-01 100.0% 93.7%
3780948 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 61.0 5.62e-01 92.4% 84.0%
3595328 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 52.0 4.78e-01 77.2% 61.0%
3260870 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 51.0 4.94e-01 75.9% 67.8%
3632622 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 51.0 4.58e-01 75.9% 65.5%
3262749 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 52.0 4.73e-01 77.2% 68.6%
3410614 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 52.0 4.76e-01 78.5% 64.8%
5023542 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 48.0 4.96e-01 70.9% 74.7%
4999898 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 48.0 4.60e-01 70.9% 77.8%
3544301 2004.1.1.635 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 0.70 55.0 3.77e-01 86.1% 25.0%
3250910 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 50.0 5.34e-01 75.9% 94.3%
4979624 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 48.0 4.28e-01 70.9% 63.6%
3636290 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.70 51.0 5.15e-01 78.5% 88.7%
3740807 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 49.0 4.81e-01 73.4% 74.1%
3357930 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 50.0 5.13e-01 75.9% 90.7%
3711102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 50.0 4.63e-01 75.9% 63.0%
3321720 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 50.0 4.47e-01 75.9% 63.6%
3190610 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 50.0 4.45e-01 75.9% 71.8%
3637371 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 50.0 4.57e-01 77.2% 61.9%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 48.0 5.24e-01 73.4% 96.9%
3737985 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 50.0 4.61e-01 75.9% 64.0%
4477560 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.68 51.0 3.80e-01 81.0% 80.0%
3494198 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.68 55.0 4.05e-01 84.8% 54.2%
3992039 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 52.0 4.95e-01 82.3% 78.7%
3578925 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 49.0 4.52e-01 77.2% 67.6%
3581967 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.67 48.0 5.19e-01 74.7% 95.4%
3218484 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.67 52.0 5.46e-01 82.3% 95.7%
4928064 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 4.81e-01 70.9% 100.0%
3300974 328.6.1.2 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.67 52.0 4.05e-01 84.8% 90.3%
4028119 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.83e-01 72.2% 95.7%
4143892 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.67 50.0 3.63e-01 81.0% 80.0%
3987280 320.1.1.3 a+b two layers › R3H domain-like › R3H domain › R3H domain › YlmH_1st 0.66 48.0 4.75e-01 77.2% 77.6%
5032312 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.66 45.0 4.07e-01 70.9% 59.1%
5054938 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.65 45.0 3.97e-01 72.2% 55.5%
3457072 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.65 47.0 3.94e-01 77.2% 62.1%
5036673 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.64 48.0 3.55e-01 81.0% 80.5%
4948012 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.96e-01 72.2% 57.4%
3693280 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.64 44.0 4.19e-01 72.2% 72.6%
169108 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 45.0 4.14e-01 77.2% 70.5%
3501315 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 46.0 4.35e-01 82.3% 78.0%
5073929 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 42.0 3.85e-01 72.2% 69.1%
5075830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.85e-01 72.2% 60.9%
4966155 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.61 42.0 3.73e-01 72.2% 65.8%
5005295 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 42.0 3.59e-01 72.2% 59.2%
4959073 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.60 43.0 3.84e-01 77.2% 56.7%
3548326 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 3.17e-01 97.5% 26.3%
3888859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 3.83e-01 70.9% 68.0%
4950221 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 40.0 3.70e-01 72.2% 62.0%
4994660 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.69e-01 72.2% 75.5%
4969310 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.58 40.0 3.18e-01 73.4% 36.1%
4983426 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 4.07e-01 77.2% 86.3%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.61e-01 72.2% 71.0%
4964434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.57e-01 72.2% 95.6%