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OP628075.1__WAB25116.1__M3_0165__00164

Bact-Vir

OP628075.1__WAB25116.1__M3_0165__00164

Identity

Accession:
OP628075 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Lysinibacillus_phage_vB_LfM_LysYB1

TaxID: 2995278

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-82
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.13e-01 88.0% 100.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 50.0 3.64e-01 94.7% 87.7%
3ufiA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.57 48.0 3.90e-01 96.0% 56.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.10e-01 85.3% 73.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.83e-01 85.3% 84.6%
3mwcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 44.0 3.68e-01 85.3% 94.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 46.0 4.31e-01 98.7% 72.6%
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.11e-01 94.7% 79.8%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.56 43.0 4.34e-01 89.3% 80.8%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.34e-01 97.3% 94.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.32e-01 93.3% 80.2%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 42.0 3.92e-01 84.0% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.31e-01 85.3% 85.1%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.23e-01 94.7% 91.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.25e-01 85.3% 90.6%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.82e-01 85.3% 67.4%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.47e-01 88.0% 100.0%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 3.93e-01 86.7% 87.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.29e-01 84.0% 98.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.42e-01 85.3% 98.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.53e-01 93.3% 98.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.33e-01 84.0% 100.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.53 46.0 4.23e-01 100.0% 92.1%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.99e-01 88.0% 79.5%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 3.83e-01 82.7% 89.5%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.36e-01 85.3% 100.0%
6tnyB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.38e-01 77.3% 95.5%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.42e-01 81.3% 98.2%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 44.0 4.20e-01 100.0% 94.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 4.11e-01 85.3% 92.5%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 4.02e-01 85.3% 96.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 4.19e-01 93.3% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 3.92e-01 90.7% 84.5%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.64e-01 86.7% 71.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 55.0 5.72e-01 98.7% 100.0%
3778437 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 57.0 4.91e-01 100.0% 95.7%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.63e-01 94.7% 85.3%
3928323 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.59 52.0 3.90e-01 100.0% 43.2%
3622911 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 48.0 4.95e-01 96.0% 98.6%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.58 47.0 4.34e-01 98.7% 69.0%
3231502 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 49.0 4.20e-01 97.3% 99.2%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.72e-01 100.0% 90.7%
999476 11.1.4.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa_like_1 0.57 48.0 3.92e-01 96.0% 58.0%
3789630 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 44.0 3.19e-01 85.3% 77.8%
3486717 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 45.0 4.79e-01 98.7% 100.0%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.51e-01 88.0% 87.1%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.57 45.0 4.20e-01 97.3% 68.0%
313834 4.1.1.27 ↗ beta barrels › SH3 › SH3 › SH3 › NHase_beta_C 0.56 47.0 4.11e-01 94.7% 79.2%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.57e-01 100.0% 84.3%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 43.0 4.27e-01 84.0% 88.7%
3903778 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.56 48.0 3.71e-01 100.0% 92.9%
3928262 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.51e-01 86.7% 100.0%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.56 39.0 3.78e-01 84.0% 65.9%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 43.0 4.36e-01 85.3% 85.3%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 48.0 4.14e-01 100.0% 96.0%
4091379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.36e-01 94.7% 90.0%
4508544 4.1.1.27 ↗ beta barrels › SH3 › SH3 › SH3 › NHase_beta_C 0.55 46.0 4.18e-01 94.7% 85.7%
3777744 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 42.0 3.96e-01 85.3% 67.8%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.60e-01 100.0% 98.6%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 41.0 4.29e-01 86.7% 87.1%
3513856 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.55 38.0 2.94e-01 74.7% 71.9%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.02e-01 88.0% 72.9%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.15e-01 85.3% 81.3%
3236054 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 39.0 3.92e-01 85.3% 76.0%
3561013 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 39.0 3.97e-01 86.7% 77.3%
25836 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 41.0 4.24e-01 86.7% 86.1%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.06e-01 86.7% 80.0%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.34e-01 89.3% 93.8%
3476188 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.01e-01 84.0% 78.7%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 39.0 4.11e-01 86.7% 87.7%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 3.70e-01 98.7% 48.4%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 42.0 4.22e-01 85.3% 85.3%
3773104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 3.91e-01 98.7% 80.0%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 4.30e-01 86.7% 93.8%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 39.0 3.71e-01 86.7% 64.4%
3490689 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 41.0 4.26e-01 93.3% 90.0%
3868602 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 41.0 3.82e-01 86.7% 83.0%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 41.0 3.86e-01 86.7% 68.9%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 38.0 3.87e-01 86.7% 76.0%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 3.18e-01 90.7% 33.5%
4483819 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 39.0 4.03e-01 86.7% 84.3%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 40.0 4.04e-01 84.0% 97.3%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 39.0 4.01e-01 86.7% 84.3%
3797477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.38e-01 85.3% 98.5%
3930461 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 39.0 3.98e-01 85.3% 81.3%
3741085 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 39.0 3.05e-01 82.7% 43.3%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 40.0 3.93e-01 85.3% 78.8%
3399557 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.27e-01 90.7% 98.6%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 4.07e-01 85.3% 95.0%
3226229 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 39.0 4.10e-01 81.3% 95.4%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 43.0 4.06e-01 97.3% 76.7%
3636812 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 38.0 3.98e-01 86.7% 90.8%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 42.0 4.31e-01 93.3% 98.6%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.18e-01 92.0% 98.5%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 38.0 3.99e-01 86.7% 88.2%
3255188 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 39.0 3.29e-01 86.7% 63.4%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.24e-01 98.7% 95.3%
3308710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 34.0 3.58e-01 70.7% 94.3%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.50 38.0 3.47e-01 85.3% 85.2%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.50 38.0 3.88e-01 86.7% 82.7%