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OP628076.1__WAB25357.1__M5_0179__00178

Bact-Vir

OP628076.1__WAB25357.1__M5_0179__00178

Identity

Accession:
OP628076 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Lysinibacillus_phage_vB_LfM_LysYB2

TaxID: 2995279

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: rep: IMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083292__D4-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12961.14 best DUF3850 26.9 6.00e-06 96.4% 77.9%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.90 77.0 7.94e-01 100.0% 94.9%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 62.0 5.17e-01 100.0% 81.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.67 55.0 5.24e-01 100.0% 76.0%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.67 60.0 5.40e-01 100.0% 76.1%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.66 41.0 4.20e-01 83.1% 64.6%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 50.0 4.81e-01 100.0% 72.3%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 41.0 3.99e-01 83.1% 59.3%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.63 47.0 4.97e-01 98.8% 94.3%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 50.0 4.55e-01 100.0% 64.1%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.36e-01 100.0% 70.9%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.61 50.0 3.76e-01 100.0% 37.2%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.61 56.0 5.33e-01 100.0% 92.6%
3dclA01 2.102.30.10 Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain 0.61 56.0 4.51e-01 100.0% 55.6%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 54.0 4.47e-01 100.0% 73.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.34e-01 100.0% 71.3%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 49.0 4.78e-01 100.0% 80.6%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.07e-01 100.0% 59.4%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 4.23e-01 100.0% 71.8%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 44.0 4.26e-01 100.0% 73.7%
1d2iA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.57 49.0 3.67e-01 97.6% 86.9%
1dmuA00 3.40.600.20 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI 0.57 50.0 3.45e-01 100.0% 50.5%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.56 42.0 4.19e-01 96.4% 77.5%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.71e-01 81.9% 96.7%
3uk7A01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 43.0 3.39e-01 88.0% 62.6%
2odhA01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.54 39.0 3.46e-01 100.0% 51.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.54 46.0 4.42e-01 95.2% 94.9%
4fk7A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.54 43.0 3.34e-01 90.4% 92.6%
3d4rB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 40.0 4.36e-01 80.7% 100.0%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 45.0 3.03e-01 100.0% 26.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 46.0 3.05e-01 100.0% 26.5%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 43.0 3.74e-01 100.0% 88.3%
4iy0A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 33.0 2.78e-01 100.0% 36.2%
6z9uA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 25.0 2.58e-01 71.1% 43.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
373012 1.1.9.14 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.91 78.0 7.99e-01 100.0% 93.8%
3252646 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 63.0 5.33e-01 100.0% 62.9%
4154078 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.70 65.0 4.71e-01 100.0% 40.5%
4458331 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.70 65.0 4.60e-01 100.0% 36.6%
3974369 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 60.0 6.02e-01 100.0% 90.6%
4998591 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 61.0 5.08e-01 97.6% 83.4%
4610038 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.69 63.0 4.51e-01 100.0% 35.7%
4170287 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.69 63.0 4.59e-01 100.0% 39.1%
4493150 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.69 63.0 4.52e-01 100.0% 36.5%
4974763 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.68 62.0 5.14e-01 100.0% 65.5%
3542585 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 62.0 4.36e-01 100.0% 37.2%
4128952 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.67 61.0 5.17e-01 100.0% 64.4%
3199622 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 60.0 4.98e-01 100.0% 81.4%
4540430 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 61.0 4.39e-01 100.0% 36.1%
4196187 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 61.0 4.31e-01 100.0% 35.1%
4577588 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.67 61.0 5.15e-01 100.0% 64.4%
2665335 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 55.0 4.60e-01 100.0% 51.4%
3636050 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 47.0 4.26e-01 85.5% 53.9%
4091784 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.67 61.0 5.06e-01 100.0% 62.1%
3956124 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 59.0 4.41e-01 100.0% 40.5%
4048581 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 58.0 4.19e-01 100.0% 35.1%
4032612 1.1.9.45 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 0.65 57.0 4.74e-01 100.0% 68.0%
3974181 1.1.5.88 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.65 54.0 5.27e-01 100.0% 83.3%
4033714 1.1.13.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.65 59.0 5.65e-01 100.0% 90.5%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 5.00e-01 100.0% 76.0%
3968097 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 53.0 4.80e-01 98.8% 68.2%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 51.0 4.66e-01 100.0% 67.0%
4656128 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 56.0 4.34e-01 100.0% 70.5%
3384073 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 53.0 4.70e-01 100.0% 66.7%
4564083 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 53.0 3.86e-01 100.0% 36.7%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.59 52.0 4.65e-01 100.0% 69.6%
4618288 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 47.0 4.85e-01 95.2% 91.1%
3590201 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 53.0 4.86e-01 100.0% 88.9%
4519471 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 49.0 4.92e-01 96.4% 91.7%
4241480 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 48.0 3.67e-01 100.0% 41.0%
3467154 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 42.0 3.30e-01 100.0% 39.4%
3611282 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 43.0 3.67e-01 100.0% 53.6%
3392487 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 41.0 3.50e-01 85.5% 87.9%
4015446 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.22e-01 80.7% 71.6%
5035871 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 37.0 3.61e-01 92.8% 68.4%
3901674 4.1.1.135 ↗ beta barrels › SH3 › SH3 › SH3 › Nup188_SH3-like 0.51 38.0 4.00e-01 80.7% 100.0%
4030928 3535.1.1.1 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.51 45.0 3.36e-01 100.0% 41.9%
4932882 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.50 41.0 3.51e-01 100.0% 54.8%