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OP646176.1__UZT28564.1__vBBceSLY5_0009__00008
Bact-VirOP646176.1__UZT28564.1__vBBceSLY5_0009__00008
Identity
- Accession:
- OP646176 ↗
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Taxonomy
TaxID: 2996058
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-50
Domain cluster:
rep: FM163528.1__CAQ57834.1__X__00039__D2-50
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.70 | 54.0 | 5.50e-01 | 100.0% | 93.5% |
| 1h7sA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.62 | 47.0 | 3.57e-01 | 85.4% | 66.1% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 54.0 | 4.62e-01 | 100.0% | 77.6% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 3.89e-01 | 95.8% | 100.0% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.58 | 50.0 | 4.12e-01 | 100.0% | 80.0% |
| 3aluA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.56 | 41.0 | 3.02e-01 | 85.4% | 51.0% |
| 2efxF00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 47.0 | 2.94e-01 | 100.0% | 51.7% |
| 1sp8C02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 37.0 | 2.47e-01 | 70.8% | 26.1% |
| 3gyrA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 39.0 | 2.66e-01 | 79.2% | 49.5% |
| 1q45A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 42.0 | 2.59e-01 | 91.7% | 21.9% |
| 3i9v102 | 3.40.50.11540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NADH-ubiquinone oxidoreductase 51kDa subunit | 0.54 | 42.0 | 2.95e-01 | 89.6% | 49.7% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 41.0 | 3.30e-01 | 91.7% | 67.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.90 | 82.0 | 8.09e-01 | 100.0% | 94.0% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.78 | 65.0 | 6.72e-01 | 100.0% | 100.0% |
| 3705484 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 58.0 | 5.52e-01 | 100.0% | 70.9% |
| 3606398 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 58.0 | 5.51e-01 | 100.0% | 70.9% |
| 3714926 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 57.0 | 5.71e-01 | 100.0% | 78.0% |
| 3714918 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 57.0 | 5.46e-01 | 100.0% | 70.9% |
| 3593797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.75 | 56.0 | 5.38e-01 | 100.0% | 70.9% |
| 4048813 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.74 | 59.0 | 5.63e-01 | 100.0% | 74.5% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 57.0 | 5.54e-01 | 100.0% | 76.4% |
| 3270868 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.73 | 58.0 | 5.52e-01 | 100.0% | 74.5% |
| 3600188 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.73 | 55.0 | 5.24e-01 | 100.0% | 70.9% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.71 | 60.0 | 6.05e-01 | 100.0% | 93.8% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 55.0 | 5.66e-01 | 97.9% | 95.6% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 53.0 | 5.45e-01 | 100.0% | 95.6% |
| 3965593 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 53.0 | 4.59e-01 | 100.0% | 94.1% |
| 4948202 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.60 | 46.0 | 3.65e-01 | 85.4% | 77.1% |
| 3958223 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 43.0 | 3.57e-01 | 77.1% | 90.5% |
| 5070701 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 34.0 | 3.31e-01 | 83.3% | 45.3% |
| 2755218 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 44.0 | 2.89e-01 | 85.4% | 50.5% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.55 | 47.0 | 3.73e-01 | 100.0% | 51.4% |
| 3511749 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.55 | 42.0 | 3.00e-01 | 85.4% | 44.8% |
| 3967464 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.55 | 41.0 | 3.98e-01 | 100.0% | 73.3% |
| 3326759 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.51 | 43.0 | 3.83e-01 | 100.0% | 74.7% |
| 1662731 | 3702.1.1.1 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer | 0.51 | 36.0 | 3.44e-01 | 87.5% | 62.5% |