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OP651044.1__UZZ63823.1__SAFA_209__00209
Bact-VirOP651044.1__UZZ63823.1__SAFA_209__00209
Identity
- Accession:
- OP651044 ↗
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Kayvirus›
Staphylococcus_phage_vb_SaH_Safa
TaxID: 2996047
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-73
Domain cluster:
rep: OR296439.1__WLZ21170.1__C341T2LP_00024__00024__D17-71
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.75 | 34.0 | 3.72e-01 | 77.8% | 50.0% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.74 | 38.0 | 2.95e-01 | 87.5% | 24.1% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.71 | 38.0 | 2.98e-01 | 83.3% | 24.5% |
| 1g0dA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 29.0 | 2.64e-01 | 84.7% | 26.8% |
| 1mt1B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.66 | 32.0 | 2.76e-01 | 70.8% | 27.7% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 32.0 | 2.76e-01 | 77.8% | 30.3% |
| 1gesA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.65 | 31.0 | 2.64e-01 | 88.9% | 28.3% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 34.0 | 2.95e-01 | 70.8% | 33.3% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 33.0 | 2.86e-01 | 76.4% | 33.3% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.58 | 35.0 | 2.87e-01 | 75.0% | 33.6% |
| 5yyfA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.57 | 42.0 | 3.38e-01 | 79.2% | 92.8% |
| 5jtwA06 | 6.20.50.160 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 25.0 | 2.66e-01 | 75.0% | 45.2% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 28.0 | 2.55e-01 | 80.6% | 29.4% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.56 | 46.0 | 3.16e-01 | 95.8% | 64.6% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 32.0 | 2.15e-01 | 91.7% | 14.0% |
| 4eo0A00 | 3.30.110.160 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.54 | 40.0 | 3.61e-01 | 81.9% | 98.1% |
| 4cbpA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.19e-01 | 73.6% | 73.6% |
| 4kkpA02 | 2.60.40.3880 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.10e-01 | 73.6% | 55.8% |
| 2jmuA01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.50 | 34.0 | 2.45e-01 | 70.8% | 39.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3362248 | 632.3.1.20 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698 | 0.77 | 42.0 | 4.91e-01 | 83.3% | 76.0% |
| 4945299 | 512.1.1.5 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd | 0.71 | 44.0 | 3.74e-01 | 70.8% | 37.5% |
| 4550623 | 825.1.1.2 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 | 0.69 | 51.0 | 3.56e-01 | 79.2% | 32.4% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.67 | 39.0 | 2.98e-01 | 80.6% | 25.0% |
| 5074420 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.66 | 41.0 | 3.37e-01 | 76.4% | 33.3% |
| 5054385 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.65 | 39.0 | 3.98e-01 | 73.6% | 61.4% |
| 4490121 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.65 | 39.0 | 3.55e-01 | 73.6% | 45.3% |
| 4185773 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.64 | 48.0 | 3.47e-01 | 81.9% | 36.2% |
| 5857 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.64 | 38.0 | 3.61e-01 | 73.6% | 50.6% |
| 3787225 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.63 | 39.0 | 2.84e-01 | 72.2% | 22.6% |
| 2323990 | 327.13.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAG_C | 0.63 | 36.0 | 2.94e-01 | 94.4% | 28.8% |
| 1155879 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.62 | 50.0 | 3.49e-01 | 90.3% | 27.8% |
| 2799871 | 5089.1.1.2 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF | 0.57 | 47.0 | 3.21e-01 | 97.2% | 31.0% |
| 2833984 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.57 | 42.0 | 2.77e-01 | 81.9% | 18.6% |
| 4994610 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 36.0 | 3.11e-01 | 70.8% | 40.0% |
| 1943 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.56 | 46.0 | 3.17e-01 | 95.8% | 64.8% |
| 1502527 | 5089.1.1.4 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF_1 | 0.56 | 49.0 | 3.29e-01 | 100.0% | 40.9% |
| 4935003 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.56 | 34.0 | 3.36e-01 | 72.2% | 57.3% |
| 5859 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.54 | 30.0 | 2.79e-01 | 86.1% | 40.9% |
| None | — | 0.54 | 43.0 | 3.01e-01 | 95.8% | 80.2% | |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 31.0 | 2.72e-01 | 84.7% | 34.2% |
| 5003060 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 2.88e-01 | 77.8% | 31.1% |
| 3675745 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.52 | 33.0 | 3.35e-01 | 90.3% | 64.4% |
| 1509442 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.51 | 42.0 | 3.48e-01 | 100.0% | 88.1% |
| 4183697 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 42.0 | 3.27e-01 | 90.3% | 42.6% |