←Back to structures

OP712466.1__WBF76815.1__PSV3_00113__00010

Bact-Vir

OP712466.1__WBF76815.1__PSV3_00113__00010

Identity

Accession:
OP712466 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Septimatrevirus_PSV32

TaxID: 3432359

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-95
PDB
Domain cluster: rep: IMGVR_UViG_3300022470_000014-3300022470-Ga0190367_10025133__D1-99
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.64 51.0 4.66e-01 86.3% 84.9%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.64 47.0 3.94e-01 80.0% 86.8%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.59 45.0 3.14e-01 81.2% 30.4%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 42.0 4.59e-01 81.2% 93.8%
7nl1H02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 41.0 3.37e-01 95.0% 43.3%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 3.04e-01 77.5% 80.1%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 43.0 3.36e-01 93.8% 92.7%
7jptA03 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 37.0 3.24e-01 77.5% 69.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032640 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.94 89.0 5.73e-01 100.0% 27.7%
3946757 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.84 77.0 5.48e-01 100.0% 39.6%
4368957 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.72 61.0 4.87e-01 92.5% 87.1%
3620317 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.71 50.0 3.10e-01 100.0% 13.4%
3997869 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.69 51.0 3.60e-01 100.0% 27.0%
4256702 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.64 47.0 4.12e-01 78.8% 79.8%
3828823 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.61 56.0 3.83e-01 100.0% 51.3%
3365658 3324.1.1.1 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › MTR4_beta-barrel 0.60 56.0 3.88e-01 100.0% 55.5%
1304888 312.1.1.5 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.60 41.0 3.10e-01 86.3% 31.1%
3826725 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.60 49.0 3.11e-01 91.3% 68.3%
3621256 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.59 48.0 3.34e-01 91.3% 28.7%
4011237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.51e-01 93.8% 78.7%
4979300 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 40.0 3.41e-01 86.3% 45.3%
4167106 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 2.78e-01 81.2% 81.4%
4972906 3755.3.1.636 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF6788 0.56 48.0 4.13e-01 91.3% 90.0%
3600178 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 45.0 3.46e-01 91.3% 78.4%
3196796 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.54 46.0 3.25e-01 91.3% 86.1%
3595609 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.54 46.0 3.37e-01 91.3% 36.9%
3598360 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 3.40e-01 90.0% 77.6%
5046708 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.36e-01 81.2% 51.1%
4403811 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.52 32.0 2.85e-01 82.5% 42.5%
4942451 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.65e-01 85.0% 66.4%
4941893 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.50 36.0 3.19e-01 78.8% 94.6%
D2 medium residues 107-140
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3osnA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.73 55.0 4.30e-01 85.3% 45.5%
4dezA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.71 54.0 4.28e-01 85.3% 58.3%
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.68 48.0 4.31e-01 85.3% 56.1%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 45.0 3.71e-01 82.4% 64.1%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.59 44.0 3.71e-01 91.2% 90.0%
1cokA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 40.0 3.41e-01 82.4% 48.5%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.56 45.0 3.22e-01 82.4% 33.0%
2i1qA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 39.0 3.54e-01 94.1% 54.8%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 2.73e-01 97.1% 19.4%
2dflA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 35.0 3.16e-01 82.4% 48.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3904095 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 59.0 4.23e-01 82.4% 33.7%
3390495 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 58.0 4.80e-01 85.3% 61.7%
3914695 102.1.1.51 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.71 54.0 4.44e-01 85.3% 60.0%
4088260 2005.1.1.5 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c 0.61 47.0 2.82e-01 100.0% 11.6%