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OP712466.1__WBF76866.1__PSV3_00164__00061

Bact-Vir

OP712466.1__WBF76866.1__PSV3_00164__00061

Identity

Accession:
OP712466 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Septimatrevirus_PSV32

TaxID: 3432359

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-110
PDB
Domain cluster: rep: IMGVR_UViG_3300012411_001104-3300012411-Ga0153880_14704532__D66-210
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.70 57.0 4.73e-01 86.3% 64.8%
1rniA02 3.30.2250.10 Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain 0.67 59.0 5.65e-01 94.1% 95.7%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.62 37.0 4.19e-01 92.2% 77.9%
1ucnA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.61 47.0 4.19e-01 83.3% 98.7%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 42.0 4.78e-01 83.3% 98.6%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 40.0 3.44e-01 71.6% 72.7%
4ch7A02 3.30.70.3460 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 3.86e-01 91.2% 97.3%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.56 44.0 4.12e-01 86.3% 87.0%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 40.0 4.12e-01 75.5% 100.0%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 41.0 4.15e-01 79.4% 99.0%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 36.0 3.90e-01 92.2% 79.8%
2wbrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 38.0 4.05e-01 71.6% 94.4%
1wexA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 32.0 3.68e-01 89.2% 79.5%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.54 39.0 3.37e-01 74.5% 68.7%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 4.25e-01 81.4% 91.1%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 39.0 4.09e-01 77.5% 100.0%
2la4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 37.0 3.75e-01 71.6% 79.2%
1x5oA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 34.0 3.60e-01 92.2% 75.6%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.64e-01 70.6% 92.3%
2mzqA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 37.0 3.79e-01 75.5% 87.1%
4p6qA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 38.0 3.92e-01 78.4% 100.0%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 37.0 3.33e-01 98.0% 51.7%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 35.0 3.63e-01 70.6% 84.5%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.99e-01 80.4% 97.8%
2aymA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.80e-01 72.5% 97.6%
2m8hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.52e-01 70.6% 82.2%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.50 36.0 3.72e-01 74.5% 86.3%
1whxA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 36.0 3.53e-01 75.5% 76.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962598 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.85 79.0 6.51e-01 98.0% 61.2%
4959587 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.80 74.0 6.18e-01 100.0% 69.4%
3989046 862.1.1.8 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.70 63.0 4.81e-01 98.0% 71.1%
3802873 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 38.0 4.27e-01 91.2% 76.0%
5061295 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.64 39.0 4.46e-01 91.2% 84.0%
4663291 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 39.0 4.29e-01 92.2% 81.2%
5041003 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.61 38.0 4.23e-01 91.2% 80.8%
1890579 304.9.1.16 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_3 0.58 41.0 3.93e-01 72.5% 79.5%
5080501 304.110.1.1 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.56 40.0 3.95e-01 75.5% 86.4%
3644956 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.55 42.0 3.90e-01 83.3% 73.3%
3398956 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.55 36.0 4.00e-01 92.2% 86.3%
3842973 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.55 44.0 4.09e-01 89.2% 88.1%
3496261 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 43.0 4.20e-01 86.3% 93.0%
3761601 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.54 40.0 4.19e-01 78.4% 100.0%
3876216 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 37.0 3.73e-01 70.6% 81.0%
5044656 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 47.0 4.44e-01 99.0% 98.4%
3264200 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 38.0 3.89e-01 72.5% 86.3%
3750774 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.54 40.0 4.03e-01 79.4% 89.0%
3612079 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 38.0 3.79e-01 76.5% 74.5%
3353750 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 38.0 3.80e-01 74.5% 81.6%
3217163 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.53 40.0 3.85e-01 83.3% 87.2%
None — 0.53 43.0 4.18e-01 90.2% 96.5%
1736250 304.110.1.3 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Prp3_C 0.53 38.0 3.49e-01 75.5% 76.5%
3487939 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 39.0 4.02e-01 79.4% 97.9%
3231799 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 39.0 3.16e-01 79.4% 63.8%
3392235 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 38.0 3.64e-01 76.5% 70.8%
3272707 327.11.2.39 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 0.53 32.0 3.69e-01 91.2% 92.3%
4282577 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 36.0 3.59e-01 71.6% 78.1%
4452423 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 37.0 3.67e-01 73.5% 77.1%
3475155 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.52 40.0 4.16e-01 85.3% 100.0%
4578112 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.52 37.0 3.93e-01 76.5% 87.8%
3569153 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 37.0 4.00e-01 75.5% 100.0%
3751695 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 38.0 3.92e-01 78.4% 91.4%
3289257 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.51 37.0 3.96e-01 76.5% 90.6%
5075535 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.51 36.0 3.71e-01 74.5% 81.0%
3623508 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.51 39.0 3.96e-01 84.3% 92.4%
5059 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.65e-01 72.5% 84.5%
4985748 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.51 37.0 3.89e-01 77.5% 91.4%
3789682 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.76e-01 72.5% 90.9%
5016775 304.122.1.1 ↗ a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.51 37.0 3.75e-01 78.4% 90.5%
3886756 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.71e-01 74.5% 90.0%
3270137 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.43e-01 72.5% 70.8%
3375910 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.34e-01 97.1% 56.9%
4014808 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.77e-01 70.6% 97.5%
3371088 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.62e-01 73.5% 79.0%
3227692 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.78e-01 74.5% 91.1%
3815332 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.51 40.0 3.76e-01 86.3% 76.8%
4024640 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 35.0 3.56e-01 73.5% 81.7%
D2 high residues 129-213
PDB
Domain cluster: rep: IMGVR_UViG_3300014491_000362-3300014491-Ga0182014_100193425__D116-194
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22763.2 best NrS1-1_pol-like_HBD 39.4 6.00e-10 63.5% 82.8%