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OP712474.1__WBF76922.1__PSV3_00220__00021
Bact-VirOP712474.1__WBF76922.1__PSV3_00220__00021
Identity
- Accession:
- OP712474 ↗
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Taxonomy
TaxID: 3432360
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-82
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27119.1 best | Phage_YdaY | 61.6 | 9.10e-17 | 100.0% | 78.0% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 39.0 | 4.32e-01 | 71.6% | 62.7% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 34.0 | 3.64e-01 | 84.0% | 51.4% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 39.0 | 4.09e-01 | 70.4% | 61.1% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.67 | 49.0 | 4.39e-01 | 80.2% | 55.3% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 41.0 | 3.33e-01 | 74.1% | 61.0% |
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.58 | 41.0 | 3.69e-01 | 72.8% | 66.4% |
| 2pywA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.58 | 44.0 | 2.95e-01 | 80.2% | 78.5% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 45.0 | 3.88e-01 | 86.4% | 100.0% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 40.0 | 3.66e-01 | 72.8% | 68.9% |
| 3floB00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.57 | 40.0 | 3.10e-01 | 72.8% | 44.4% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 44.0 | 4.10e-01 | 82.7% | 79.4% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 39.0 | 4.17e-01 | 72.8% | 93.1% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 38.0 | 3.67e-01 | 71.6% | 75.5% |
| 1zu1A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 37.0 | 4.22e-01 | 85.2% | 98.2% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 29.0 | 3.40e-01 | 79.0% | 72.9% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 44.0 | 2.95e-01 | 87.7% | 71.1% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.53 | 37.0 | 3.79e-01 | 72.8% | 80.0% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 40.0 | 3.29e-01 | 82.7% | 92.5% |
| 4az3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 3.03e-01 | 91.4% | 54.1% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 36.0 | 4.15e-01 | 87.7% | 98.4% |
| 3gr3A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 37.0 | 2.76e-01 | 77.8% | 62.8% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 41.0 | 3.11e-01 | 88.9% | 82.0% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054860 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.75 | 43.0 | 3.21e-01 | 92.6% | 24.9% |
| 4999971 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.72 | 41.0 | 3.93e-01 | 88.9% | 51.1% |
| 4977598 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 40.0 | 3.56e-01 | 88.9% | 42.7% |
| 4015729 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.68 | 42.0 | 3.62e-01 | 88.9% | 40.8% |
| 5002054 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.66 | 50.0 | 4.09e-01 | 96.3% | 44.0% |
| 3675304 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 39.0 | 3.37e-01 | 88.9% | 41.7% |
| 4224821 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 39.0 | 3.46e-01 | 88.9% | 43.5% |
| 3270487 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 39.0 | 3.50e-01 | 88.9% | 45.5% |
| 3622196 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.61 | 40.0 | 3.49e-01 | 71.6% | 45.8% |
| 3828336 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 38.0 | 3.36e-01 | 85.2% | 44.7% |
| 3849550 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.61 | 52.0 | 3.95e-01 | 100.0% | 75.3% |
| 3411883 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.60 | 40.0 | 3.49e-01 | 72.8% | 46.7% |
| 3940232 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 34.0 | 3.20e-01 | 72.8% | 42.9% |
| 4681355 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 40.0 | 3.47e-01 | 70.4% | 59.2% |
| 4948599 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.59 | 39.0 | 3.80e-01 | 84.0% | 61.1% |
| 2505916 | 101.1.1.39 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ | 0.59 | 39.0 | 3.15e-01 | 88.9% | 35.3% |
| 3710532 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 41.0 | 3.73e-01 | 88.9% | 56.2% |
| 4259368 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 41.0 | 3.50e-01 | 71.6% | 59.2% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 40.0 | 3.73e-01 | 71.6% | 70.3% |
| 3181713 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 41.0 | 2.85e-01 | 74.1% | 26.8% |
| 4463557 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 40.0 | 3.84e-01 | 72.8% | 80.0% |
| 3185576 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 41.0 | 3.08e-01 | 72.8% | 49.4% |
| 3927319 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 41.0 | 3.84e-01 | 74.1% | 83.0% |
| 4025452 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.57 | 41.0 | 3.57e-01 | 72.8% | 87.8% |
| 3394225 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 40.0 | 3.51e-01 | 71.6% | 89.6% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.57 | 43.0 | 3.65e-01 | 77.8% | 68.5% |
| 5078448 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 40.0 | 3.57e-01 | 72.8% | 66.4% |
| 3575539 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.57 | 46.0 | 3.88e-01 | 91.4% | 52.6% |
| 5024938 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.57 | 43.0 | 3.64e-01 | 97.5% | 50.0% |
| 3614292 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.56 | 51.0 | 4.00e-01 | 100.0% | 57.6% |
| 3538512 | 3892.1.1.0 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II | 0.56 | 51.0 | 4.04e-01 | 100.0% | 60.0% |
| 4947568 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 39.0 | 2.92e-01 | 72.8% | 30.5% |
| 139279 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 38.0 | 3.67e-01 | 71.6% | 75.5% |
| 3594965 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 39.0 | 3.22e-01 | 72.8% | 52.1% |
| 4029803 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 39.0 | 3.29e-01 | 87.7% | 45.4% |
| 4381440 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 39.0 | 3.46e-01 | 74.1% | 63.5% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 41.0 | 3.96e-01 | 82.7% | 70.0% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 39.0 | 3.58e-01 | 74.1% | 69.5% |
| 4666900 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 39.0 | 3.33e-01 | 74.1% | 58.4% |
| 3988581 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 38.0 | 3.72e-01 | 72.8% | 70.0% |
| 3498627 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.54 | 46.0 | 3.30e-01 | 96.3% | 65.9% |
| 5018039 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 41.0 | 3.65e-01 | 80.2% | 98.3% |
| 3438819 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 31.0 | 3.57e-01 | 74.1% | 76.7% |
| 3937187 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 38.0 | 3.45e-01 | 74.1% | 66.4% |
| 4025655 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 40.0 | 3.80e-01 | 84.0% | 66.3% |
| 4251053 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 46.0 | 3.34e-01 | 100.0% | 64.7% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.53 | 46.0 | 3.43e-01 | 100.0% | 64.5% |
| 3765032 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.53 | 44.0 | 3.69e-01 | 93.8% | 66.9% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.52 | 45.0 | 3.81e-01 | 100.0% | 66.9% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 37.0 | 3.33e-01 | 75.3% | 59.6% |
| 3193811 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.52 | 45.0 | 3.03e-01 | 96.3% | 58.8% |
| 5057974 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 41.0 | 3.61e-01 | 84.0% | 73.0% |
| 4178886 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 39.0 | 3.60e-01 | 85.2% | 64.0% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 33.0 | 3.48e-01 | 75.3% | 73.0% |
| 3634169 | 4177.1.1.27 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 | 0.50 | 44.0 | 3.02e-01 | 96.3% | 75.3% |