←Back to structures
OP745419.1__WIL01565.1__LDJ74_RS15175__00021
Bact-VirOP745419.1__WIL01565.1__LDJ74_RS15175__00021
Identity
- Accession:
- OP745419 ↗
- Kingdom:
- phage
Quality
95.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-44
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.95 | 87.0 | 5.36e-01 | 100.0% | 20.3% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.94 | 83.0 | 5.44e-01 | 100.0% | 26.8% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.94 | 85.0 | 5.79e-01 | 97.5% | 33.1% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.94 | 85.0 | 6.97e-01 | 100.0% | 59.4% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.94 | 85.0 | 5.67e-01 | 100.0% | 29.0% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.93 | 85.0 | 5.59e-01 | 100.0% | 27.5% |
| 2oi2A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.93 | 85.0 | 5.66e-01 | 97.5% | 29.1% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.93 | 83.0 | 4.75e-01 | 100.0% | 11.5% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.93 | 82.0 | 5.09e-01 | 97.5% | 19.7% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.92 | 74.0 | 7.07e-01 | 87.5% | 76.1% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.92 | 82.0 | 5.48e-01 | 100.0% | 27.8% |
| 2yxyA01 | 1.10.287.880 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain | 0.92 | 78.0 | 7.19e-01 | 92.5% | 74.0% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.92 | 83.0 | 5.77e-01 | 100.0% | 34.5% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.91 | 80.0 | 5.52e-01 | 100.0% | 31.0% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.90 | 68.0 | 6.51e-01 | 82.5% | 70.2% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.90 | 78.0 | 5.22e-01 | 100.0% | 27.0% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 79.0 | 5.19e-01 | 100.0% | 38.1% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.89 | 77.0 | 4.93e-01 | 97.5% | 22.3% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.89 | 81.0 | 5.42e-01 | 97.5% | 29.1% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.89 | 77.0 | 5.19e-01 | 95.0% | 28.4% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.89 | 73.0 | 6.77e-01 | 92.5% | 72.5% |
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.89 | 73.0 | 4.90e-01 | 90.0% | 26.7% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.88 | 77.0 | 4.76e-01 | 97.5% | 18.7% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.87 | 66.0 | 4.64e-01 | 82.5% | 28.4% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.87 | 75.0 | 6.95e-01 | 100.0% | 78.8% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.87 | 75.0 | 5.30e-01 | 100.0% | 32.3% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.87 | 76.0 | 5.44e-01 | 100.0% | 36.3% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.86 | 59.0 | 3.95e-01 | 77.5% | 20.4% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.86 | 75.0 | 5.30e-01 | 100.0% | 33.6% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.86 | 76.0 | 5.70e-01 | 97.5% | 42.4% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.86 | 69.0 | 5.61e-01 | 90.0% | 48.0% |
| 4rpfA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.84 | 67.0 | 4.56e-01 | 95.0% | 26.3% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.84 | 63.0 | 5.62e-01 | 82.5% | 58.2% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.83 | 72.0 | 5.56e-01 | 100.0% | 45.3% |
| 5tpmB00 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.82 | 64.0 | 4.41e-01 | 90.0% | 25.5% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.82 | 67.0 | 5.52e-01 | 95.0% | 52.0% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.82 | 69.0 | 4.99e-01 | 97.5% | 35.4% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 68.0 | 5.85e-01 | 100.0% | 60.9% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 59.0 | 5.39e-01 | 82.5% | 60.0% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.79 | 67.0 | 5.21e-01 | 97.5% | 46.0% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.79 | 66.0 | 5.28e-01 | 97.5% | 47.6% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.76 | 62.0 | 4.01e-01 | 100.0% | 19.4% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 56.0 | 5.27e-01 | 90.0% | 72.5% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 58.0 | 4.89e-01 | 100.0% | 54.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3441654 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.97 | 84.0 | 4.75e-01 | 92.5% | 10.4% |
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.97 | 89.0 | 7.62e-01 | 100.0% | 66.7% |
| 3363789 | 109.4.1.285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N | 0.96 | 88.0 | 5.02e-01 | 100.0% | 11.9% |
| 4023890 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.96 | 89.0 | 6.88e-01 | 100.0% | 50.6% |
| 4235024 | 109.4.1.2782 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, PF30363, PF30475 | 0.96 | 88.0 | 4.72e-01 | 100.0% | 6.2% |
| 4016845 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.95 | 87.0 | 6.50e-01 | 100.0% | 44.4% |
| 4949162 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.94 | 85.0 | 4.65e-01 | 100.0% | 7.0% |
| 3230775 | 192.1.1.25 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C | 0.94 | 85.0 | 6.04e-01 | 100.0% | 36.4% |
| 3584539 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.94 | 86.0 | 6.83e-01 | 100.0% | 53.3% |
| 3976258 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.93 | 85.0 | 7.57e-01 | 100.0% | 72.7% |
| 4966900 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.93 | 82.0 | 6.90e-01 | 97.5% | 60.0% |
| 3965106 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.92 | 83.0 | 6.67e-01 | 100.0% | 53.3% |
| 4960168 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.92 | 83.0 | 5.32e-01 | 100.0% | 24.2% |
| 4930709 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.91 | 82.0 | 5.11e-01 | 100.0% | 20.5% |
| 2098022 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.91 | 82.0 | 6.31e-01 | 100.0% | 47.1% |
| 3606094 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.91 | 80.0 | 6.19e-01 | 100.0% | 47.1% |
| 4988301 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.90 | 81.0 | 5.34e-01 | 100.0% | 27.3% |
| 4973347 | 515.1.1.4 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 | 0.90 | 80.0 | 5.16e-01 | 100.0% | 23.5% |
| 5020952 | 605.1.1.356 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2178 | 0.90 | 82.0 | 5.60e-01 | 100.0% | 32.0% |
| 5082167 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.89 | 79.0 | 5.99e-01 | 100.0% | 45.6% |
| 3240245 | 192.17.1.1 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn | 0.89 | 76.0 | 7.02e-01 | 95.0% | 74.0% |
| 991025 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.89 | 77.0 | 7.49e-01 | 100.0% | 88.9% |
| 3513471 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.89 | 70.0 | 7.35e-01 | 87.5% | 100.0% |
| 5024994 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.88 | 79.0 | 5.50e-01 | 100.0% | 34.2% |
| 3336946 | 192.1.1.14 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MPH2 | 0.88 | 78.0 | 6.81e-01 | 100.0% | 70.0% |
| None | — | 0.88 | 79.0 | 4.83e-01 | 100.0% | 18.2% | |
| 140767 | 632.8.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › DUF6853 | 0.87 | 75.0 | 5.30e-01 | 100.0% | 32.3% |
| 5043430 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.87 | 78.0 | 6.26e-01 | 100.0% | 54.7% |
| 5053329 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.87 | 76.0 | 5.38e-01 | 100.0% | 33.3% |
| 3208188 | 109.4.1.140 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20 | 0.87 | 74.0 | 4.01e-01 | 100.0% | 5.4% |
| 4472442 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.87 | 65.0 | 6.54e-01 | 82.5% | 82.5% |
| 5013157 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.86 | 74.0 | 5.16e-01 | 100.0% | 30.8% |
| 4426402 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.85 | 76.0 | 4.70e-01 | 100.0% | 18.2% |
| 5043090 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.84 | 72.0 | 5.81e-01 | 100.0% | 50.0% |
| 5025189 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.84 | 68.0 | 6.19e-01 | 95.0% | 67.3% |
| 3514275 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.84 | 71.0 | 5.46e-01 | 100.0% | 46.3% |
| 3213282 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.83 | 71.0 | 5.79e-01 | 97.5% | 56.0% |
| 3925076 | 601.2.1.13 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Srg | 0.82 | 70.0 | 5.44e-01 | 100.0% | 44.4% |
| 4945676 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.81 | 68.0 | 5.27e-01 | 97.5% | 43.3% |
| 4127 | 159.1.2.2 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG | 0.79 | 66.0 | 5.26e-01 | 97.5% | 47.0% |
| 5023287 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.78 | 62.0 | 5.33e-01 | 100.0% | 54.3% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.76 | 65.0 | 5.60e-01 | 100.0% | 65.2% |
| 4961158 | 5076.2.1.3 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 | 0.73 | 57.0 | 3.60e-01 | 95.0% | 16.4% |