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OP745480.1__WAI96157.1__X__00040

Bact-Vir

OP745480.1__WAI96157.1__X__00040

Identity

Accession:
OP745480 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Vibrio_phage_vB_VhaP_PG11

TaxID: 2996149

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-157
PDB
Domain cluster: rep: MW015081.1__QPX48103.1__X__00138__D69-155
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 33.0 4.27e-01 78.5% 86.4%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 32.0 4.24e-01 78.5% 96.2%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 30.0 3.95e-01 77.6% 85.7%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 30.0 3.85e-01 77.6% 94.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 28.0 3.62e-01 82.2% 85.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 28.0 3.68e-01 76.6% 94.1%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 27.0 3.08e-01 100.0% 59.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 32.0 3.79e-01 83.2% 84.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 32.0 3.84e-01 83.2% 93.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 32.0 3.84e-01 100.0% 98.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.90e-01 100.0% 100.0%
5080621 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 27.0 3.09e-01 84.1% 53.8%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 29.0 3.48e-01 78.5% 76.9%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 33.0 3.89e-01 83.2% 84.0%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 34.0 3.64e-01 96.3% 78.9%