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OP745480.1__WAI96203.1__X__00086

Bact-Vir

OP745480.1__WAI96203.1__X__00086

Identity

Accession:
OP745480 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Vibrio_phage_vB_VhaP_PG11

TaxID: 2996149

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tevB02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.80 71.0 5.65e-01 100.0% 62.1%
4kxfB02 1.10.1900.50 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › 0.76 58.0 5.69e-01 82.7% 82.5%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 57.0 5.85e-01 86.5% 100.0%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 65.0 5.48e-01 100.0% 89.7%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.69 51.0 4.98e-01 78.8% 73.7%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.50e-01 82.7% 60.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 46.0 4.24e-01 75.0% 55.2%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.67 55.0 4.17e-01 100.0% 40.4%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 53.0 5.31e-01 92.3% 98.1%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 51.0 3.15e-01 82.7% 92.6%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.62 47.0 4.26e-01 80.8% 66.7%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 42.0 3.76e-01 82.7% 50.7%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.61 55.0 3.63e-01 100.0% 43.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.29e-01 88.5% 66.7%
2lklA01 1.10.1900.40 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 0.60 45.0 4.14e-01 84.6% 90.3%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 52.0 3.78e-01 98.1% 60.9%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.59 46.0 4.16e-01 80.8% 65.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.59 42.0 3.51e-01 75.0% 50.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.59 47.0 3.95e-01 94.2% 95.9%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 41.0 3.00e-01 75.0% 33.8%
3ibtA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.58 49.0 4.50e-01 96.2% 76.8%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 48.0 3.49e-01 96.2% 69.6%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 41.0 3.03e-01 75.0% 38.1%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 42.0 3.72e-01 78.8% 61.3%
2i7hA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 43.0 3.06e-01 90.4% 46.0%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.39e-01 100.0% 97.3%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.56 41.0 3.77e-01 80.8% 91.9%
3l6gA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.05e-01 92.3% 92.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.35e-01 84.6% 78.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030141 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.80 70.0 5.50e-01 100.0% 76.4%
3942572 3317.1.1.5 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › KorB 0.76 65.0 5.97e-01 100.0% 74.3%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.76 64.0 5.66e-01 100.0% 86.3%
3847053 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.74 50.0 4.38e-01 76.9% 48.0%
4093066 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.73 51.0 4.36e-01 78.8% 47.5%
3337098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 49.0 4.05e-01 73.1% 100.0%
3643079 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 57.0 5.15e-01 100.0% 65.7%
3606955 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 43.0 4.44e-01 76.9% 68.0%
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 3.94e-01 80.8% 74.5%
3598 632.3.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyxo_P 0.67 53.0 5.31e-01 92.3% 98.1%
3213526 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.67 46.0 3.64e-01 73.1% 39.0%
3927046 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 39.0 3.86e-01 90.4% 56.4%
4946499 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.65 45.0 3.56e-01 71.2% 43.0%
4938693 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.65 46.0 3.87e-01 75.0% 52.9%
4027348 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.65 46.0 4.11e-01 76.9% 57.3%
4013784 3981.1.1.2 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › PANTS-like 0.64 51.0 4.44e-01 88.5% 87.5%
3626769 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.63 46.0 3.80e-01 76.9% 48.9%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.63 48.0 4.48e-01 84.6% 66.2%
5069402 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.62 51.0 4.78e-01 100.0% 75.7%
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.62 47.0 4.14e-01 80.8% 65.3%
4024083 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.61 46.0 4.43e-01 82.7% 76.7%
3928773 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.11e-01 82.7% 61.3%
3529707 4.1.1.453 ↗ beta barrels › SH3 › SH3 › SH3 › HR1_TOCA 0.57 41.0 3.44e-01 76.9% 46.3%
3547257 604.1.1.115 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PANTS-like 0.57 46.0 4.18e-01 88.5% 100.0%
3874058 6158.1.1.0 ↗ alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.57 44.0 3.56e-01 80.8% 64.4%
4628667 605.4.1.13 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PANTS-like 0.56 40.0 3.80e-01 76.9% 61.5%
2325442 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.56 49.0 4.74e-01 98.1% 91.4%
3499633 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 40.0 3.64e-01 80.8% 53.8%
3497435 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.51 39.0 3.10e-01 86.5% 44.2%