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OP745622.1__WAQ79776.1__SB2_0001__00001

Bact-Vir

OP745622.1__WAQ79776.1__SB2_0001__00001

Identity

Accession:
OP745622 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rosemountvirus› Salmonella_phage_SB2

TaxID: 3003236

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-59
PDB
Domain cluster: rep: OR397124.1__WMU95122.1__ADOKEBJH_00026__00025__D7-62
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 31.3 3.50e-07 91.5% 68.8%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 3.83e-01 81.4% 93.5%
3p5pA02 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.62 46.0 3.20e-01 81.4% 56.9%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 42.0 2.80e-01 71.2% 47.5%
2oycA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 44.0 3.53e-01 83.1% 94.3%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 46.0 3.34e-01 88.1% 86.1%
3hruB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.45e-01 84.7% 94.4%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 41.0 2.57e-01 81.4% 45.5%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 39.0 3.16e-01 93.2% 40.7%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 46.0 3.21e-01 94.9% 85.0%
4oo2A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 38.0 2.72e-01 76.3% 83.5%
4yurA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 34.0 2.70e-01 84.7% 27.4%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 38.0 3.20e-01 78.0% 80.0%
6kghA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 36.0 2.68e-01 76.3% 54.1%
5u89A02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 44.0 3.31e-01 100.0% 83.7%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.52 40.0 2.59e-01 81.4% 65.5%
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 38.0 2.54e-01 81.4% 77.0%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 46.0 2.84e-01 100.0% 75.0%
2mknA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 36.0 4.02e-01 94.9% 100.0%
2b7oA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 39.0 2.48e-01 88.1% 64.4%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.47e-01 94.9% 58.7%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 38.0 2.76e-01 83.1% 51.7%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.07e-01 88.1% 45.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.74 56.0 4.55e-01 81.4% 51.8%
4126330 101.1.9.33 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.74 48.0 3.57e-01 74.6% 26.9%
3989255 101.1.9.141 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 0.74 47.0 3.46e-01 74.6% 24.4%
None — 0.73 52.0 4.06e-01 76.3% 38.4%
3588934 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 51.0 4.95e-01 79.7% 67.7%
4030271 601.7.1.16 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.69 60.0 4.48e-01 94.9% 40.7%
5001480 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.62 47.0 3.57e-01 83.1% 91.4%
5017861 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.62 42.0 2.61e-01 72.9% 33.2%
5009673 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 3.78e-01 96.6% 77.6%
3271778 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.60 40.0 3.11e-01 88.1% 30.4%
3597190 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 2.68e-01 81.4% 22.7%
5036721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.55e-01 81.4% 70.8%
4946594 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.43e-01 71.2% 68.0%
3508205 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.59 50.0 3.52e-01 100.0% 32.0%
3376780 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.58 36.0 3.18e-01 100.0% 42.4%
4928071 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.58 44.0 2.74e-01 81.4% 17.4%
3683178 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.57 47.0 2.94e-01 98.3% 89.6%
3285469 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.57 41.0 2.87e-01 76.3% 62.7%
4438245 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.56 46.0 3.98e-01 93.2% 87.4%
3716845 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.56 47.0 2.94e-01 98.3% 52.5%
3777935 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.56 44.0 2.80e-01 100.0% 17.6%
3733685 109.21.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.55 42.0 2.38e-01 86.4% 57.7%
3753579 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 46.0 2.72e-01 100.0% 39.6%
3487622 7558.1.1.11 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.53 39.0 2.41e-01 78.0% 88.7%
3655168 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 44.0 2.70e-01 93.2% 47.0%
3784946 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 39.0 2.39e-01 81.4% 19.3%
3332282 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 40.0 2.67e-01 84.7% 47.9%
3731212 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.53 39.0 3.52e-01 81.4% 58.8%
3812113 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.52 38.0 2.09e-01 81.4% 67.7%
4593684 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.51 41.0 2.44e-01 98.3% 24.2%
4942882 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.51 40.0 3.05e-01 94.9% 95.3%
1721528 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 38.0 2.99e-01 81.4% 60.3%
D2 high residues 65-124
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.91 66.0 7.27e-01 75.0% 97.9%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.90 67.0 5.12e-01 78.3% 41.1%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.87 65.0 6.56e-01 78.3% 83.1%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.87 65.0 3.81e-01 78.3% 12.6%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.86 63.0 6.39e-01 76.7% 100.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.85 62.0 5.69e-01 76.7% 63.6%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.85 62.0 4.66e-01 76.7% 34.8%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.84 60.0 5.91e-01 75.0% 100.0%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.84 66.0 4.72e-01 85.0% 32.1%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.83 62.0 5.42e-01 78.3% 82.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 67.0 4.32e-01 85.0% 23.3%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 67.0 6.33e-01 85.0% 79.7%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.83 69.0 5.43e-01 90.0% 100.0%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 66.0 6.15e-01 85.0% 84.9%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.82 63.0 6.97e-01 83.3% 100.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 69.0 6.11e-01 96.7% 66.3%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.81 62.0 6.64e-01 81.7% 94.2%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.81 64.0 4.34e-01 85.0% 28.9%
2iw3B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.80 62.0 3.77e-01 83.3% 14.8%
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.80 60.0 5.21e-01 80.0% 60.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 66.0 6.06e-01 90.0% 85.9%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.80 60.0 3.97e-01 80.0% 34.7%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.79 67.0 4.84e-01 90.0% 45.8%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 50.0 4.50e-01 80.0% 47.6%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 4.69e-01 83.3% 43.7%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.78 56.0 4.32e-01 76.7% 38.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 59.0 5.49e-01 85.0% 64.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.78 55.0 5.69e-01 80.0% 78.9%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.77 64.0 5.30e-01 90.0% 69.6%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 61.0 6.02e-01 85.0% 89.1%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.77 70.0 5.28e-01 100.0% 58.3%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.77 71.0 5.85e-01 98.3% 64.6%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.77 66.0 5.07e-01 93.3% 84.4%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.76 61.0 5.95e-01 90.0% 80.0%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.76 63.0 4.74e-01 88.3% 66.4%
1rtwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.75 63.0 4.30e-01 93.3% 28.4%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 61.0 6.03e-01 90.0% 84.4%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.74 58.0 5.80e-01 85.0% 83.6%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.73 58.0 4.65e-01 91.7% 44.4%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.72 57.0 5.47e-01 86.7% 80.0%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.72 63.0 5.07e-01 98.3% 82.6%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 61.0 5.11e-01 100.0% 94.4%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.70 52.0 5.12e-01 85.0% 73.8%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 48.0 4.78e-01 76.7% 96.8%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.66 53.0 4.78e-01 95.0% 64.7%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 47.0 4.22e-01 76.7% 54.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.64 48.0 4.32e-01 85.0% 60.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 47.0 3.68e-01 83.3% 51.8%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 51.0 4.30e-01 98.3% 55.8%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.90e-01 100.0% 80.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596786 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.93 70.0 4.05e-01 78.3% 11.2%
148414 605.4.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC 0.93 64.0 7.08e-01 75.0% 87.8%
3698212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.92 69.0 4.13e-01 78.3% 60.5%
3595146 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.92 65.0 7.40e-01 73.3% 100.0%
3838686 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.92 67.0 6.78e-01 76.7% 80.0%
3512620 3755.4.1.1 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.91 68.0 4.82e-01 78.3% 31.9%
4078447 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.91 66.0 4.40e-01 76.7% 23.1%
3806239 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.89 67.0 6.13e-01 78.3% 70.7%
4026159 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.89 66.0 7.16e-01 78.3% 96.0%
4965021 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 65.0 6.81e-01 78.3% 89.1%
3287947 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.87 65.0 5.58e-01 78.3% 56.7%
3489359 109.4.1.177 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.86 64.0 3.49e-01 78.3% 5.2%
4267024 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.86 64.0 5.91e-01 78.3% 64.0%
4943532 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.86 64.0 6.07e-01 78.3% 70.0%
4336724 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.86 70.0 5.51e-01 85.0% 47.3%
1821875 4970.1.1.1 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.86 62.0 6.28e-01 76.7% 81.4%
4405928 5086.1.1.196 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.85 69.0 6.51e-01 85.0% 77.1%
4884522 304.28.1.17 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sterol-sensing 0.85 62.0 4.48e-01 76.7% 30.6%
4826095 5067.1.1.5 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.85 62.0 5.27e-01 76.7% 51.6%
2393375 633.16.1.1 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › MLD 0.84 61.0 5.53e-01 76.7% 57.5%
3503536 3711.1.1.38 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Patched 0.83 62.0 5.33e-01 78.3% 53.3%
3595149 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.83 67.0 6.72e-01 85.0% 86.7%
3914117 630.1.1.1 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.83 66.0 4.85e-01 85.0% 86.9%
4952010 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 66.0 6.10e-01 85.0% 69.3%
3930829 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 66.0 6.08e-01 85.0% 88.0%
3595968 605.2.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.82 66.0 5.91e-01 85.0% 67.5%
3176480 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 66.0 5.67e-01 85.0% 76.4%
3180530 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.82 65.0 5.23e-01 85.0% 66.4%
5055329 3004.1.1.0 ↗ alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain 0.82 63.0 5.81e-01 85.0% 65.3%
2914507 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.82 68.0 4.52e-01 91.7% 24.2%
3757869 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.81 65.0 5.48e-01 85.0% 69.5%
5027312 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.81 65.0 5.32e-01 85.0% 52.4%
3715996 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.81 63.0 6.81e-01 85.0% 100.0%
5025186 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 64.0 5.54e-01 85.0% 60.0%
3855328 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.80 64.0 5.41e-01 85.0% 69.5%
4030238 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.80 64.0 4.02e-01 85.0% 88.4%
3482751 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.79 62.0 6.06e-01 85.0% 76.9%
3941266 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.79 58.0 4.68e-01 78.3% 42.6%
3935030 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 57.0 4.71e-01 76.7% 44.8%
4106620 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 62.0 5.73e-01 85.0% 72.0%
3502968 3684.1.1.23 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like 0.77 69.0 4.72e-01 98.3% 75.4%
4671 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.77 60.0 4.91e-01 85.0% 47.3%
2771114 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.77 65.0 5.00e-01 95.0% 45.3%
4232718 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.76 66.0 5.50e-01 95.0% 57.0%
3250840 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.75 58.0 5.33e-01 85.0% 79.7%
3603396 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 65.0 3.78e-01 96.7% 20.2%
3609215 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 57.0 5.24e-01 88.3% 80.0%