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OP748251.1__WCD42737.1__Abuela_20__00020

Bact-Vir

OP748251.1__WCD42737.1__Abuela_20__00020

Identity

Accession:
OP748251 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pectobacterium_phage_Abuela

TaxID: 3003825

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-50
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cymA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.63 53.0 4.14e-01 100.0% 73.1%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 42.0 3.43e-01 100.0% 51.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1891392 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.54 43.0 4.17e-01 100.0% 86.7%
3974607 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 39.0 3.00e-01 100.0% 31.5%
D2 high residues 60-110
PDB
Domain cluster: rep: MH533020.1__AXN57896.1__X__00165__D50-88
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 41.0 3.71e-01 78.4% 78.9%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.57 39.0 3.48e-01 78.4% 46.9%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.56 37.0 3.03e-01 70.6% 89.8%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.55 40.0 3.38e-01 78.4% 60.0%
2n8kA00 2.10.80.10 Mainly Beta › Ribbon › Lipase, subunit A › Lipase, subunit A 0.54 37.0 3.33e-01 72.5% 61.8%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 39.0 3.27e-01 78.4% 46.5%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.53 39.0 3.22e-01 86.3% 56.8%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 2.66e-01 84.3% 28.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989046 862.1.1.8 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.58 50.0 3.31e-01 100.0% 89.3%
5075187 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.58 41.0 3.91e-01 74.5% 75.0%
5038187 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 37.0 2.70e-01 70.6% 69.8%
164929 221.1.1.74 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ASPP2-like_RA 0.53 39.0 3.27e-01 78.4% 46.5%
5058002 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 41.0 3.16e-01 92.2% 40.3%
4388794 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 38.0 2.96e-01 86.3% 96.2%
3540238 389.1.3.1 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 0.51 39.0 3.07e-01 98.0% 71.0%