←Back to structures

OP748252.1__WCD42810.1__Ymer_40__00039

Bact-Vir

OP748252.1__WCD42810.1__Ymer_40__00039

Identity

Accession:
OP748252 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pectobacterium_phage_Ymer

TaxID: 3003826

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-118
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.87 39.0 5.77e-01 74.8% 94.1%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 38.0 4.23e-01 74.8% 60.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 34.0 4.83e-01 73.8% 90.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.74 36.0 4.26e-01 74.8% 66.2%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 35.0 5.05e-01 72.9% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 39.0 5.03e-01 74.8% 93.7%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 5.17e-01 73.8% 94.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 38.0 4.79e-01 73.8% 92.4%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 4.64e-01 72.9% 92.5%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 43.0 4.47e-01 88.8% 72.5%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 41.0 4.92e-01 72.9% 100.0%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 32.0 3.73e-01 72.0% 72.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 31.0 2.93e-01 74.8% 41.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.79 42.0 5.16e-01 83.2% 80.0%
3978220 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 55.0 6.18e-01 72.0% 91.8%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.74 36.0 4.07e-01 76.6% 60.0%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 39.0 5.28e-01 90.7% 95.0%
4253108 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 38.0 4.16e-01 79.4% 63.6%
5065841 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.70 38.0 4.27e-01 79.4% 67.9%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.70 37.0 4.05e-01 79.4% 62.2%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 37.0 4.18e-01 79.4% 67.1%
5046193 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 37.0 4.08e-01 79.4% 63.3%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 33.0 4.48e-01 74.8% 89.1%
5038850 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 37.0 4.00e-01 80.4% 62.2%
4885908 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 38.0 3.97e-01 79.4% 60.2%
3668886 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.67 44.0 4.13e-01 74.8% 55.4%
3623159 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 44.0 4.37e-01 74.8% 63.5%
3381699 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 44.0 3.93e-01 74.8% 48.7%
25836 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 38.0 4.54e-01 74.8% 84.7%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 38.0 4.52e-01 74.8% 82.7%
3581942 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 45.0 4.09e-01 74.8% 57.2%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.43e-01 88.8% 84.7%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.12e-01 77.6% 76.7%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.90e-01 74.8% 68.6%
3710595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.33e-01 95.3% 77.3%
3212073 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.56 41.0 3.55e-01 74.8% 61.9%
3616159 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.52e-01 74.8% 62.6%
4493776 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 36.0 4.38e-01 72.9% 100.0%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 36.0 4.30e-01 72.9% 96.0%
3183093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.46e-01 84.1% 54.3%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.79e-01 74.8% 71.4%
3273925 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.54 39.0 3.74e-01 74.8% 72.0%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 35.0 4.08e-01 72.0% 92.5%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.51 37.0 3.95e-01 75.7% 84.2%
4420438 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 42.0 3.35e-01 91.6% 69.6%
3475510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 37.0 4.05e-01 77.6% 91.1%