←Back to structures

OP751153.1__WAB09237.1__SEA_LITTLEMUNCHKIN_61__00061

Bact-Vir

OP751153.1__WAB09237.1__SEA_LITTLEMUNCHKIN_61__00061

Identity

Accession:
OP751153 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sourvirus› Gordonia_phage_LittleMunchkin

TaxID: 2927248

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.76 55.0 5.45e-01 77.3% 100.0%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 55.0 3.54e-01 86.4% 24.4%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 59.0 4.49e-01 97.0% 59.7%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 52.0 3.32e-01 86.4% 43.5%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 56.0 4.43e-01 97.0% 49.6%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 46.0 4.15e-01 74.2% 64.4%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.87e-01 100.0% 43.7%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 56.0 4.30e-01 100.0% 71.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.63 54.0 4.69e-01 100.0% 84.8%
1f3zA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.62 48.0 3.79e-01 86.4% 66.7%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 43.0 3.73e-01 74.2% 51.9%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 44.0 3.77e-01 77.3% 48.1%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 51.0 3.53e-01 95.5% 76.2%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 47.0 3.95e-01 87.9% 69.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 43.0 4.00e-01 81.8% 93.4%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 50.0 4.09e-01 97.0% 75.0%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 51.0 4.39e-01 97.0% 61.0%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 37.0 4.36e-01 78.8% 95.6%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 51.0 4.11e-01 98.5% 76.7%
2gprA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.58 46.0 3.62e-01 90.9% 65.6%
1d7qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.35e-01 80.3% 45.5%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 3.05e-01 93.9% 33.4%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.14e-01 80.3% 79.5%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.99e-01 80.3% 78.5%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.56 43.0 4.54e-01 83.3% 98.2%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 47.0 4.08e-01 97.0% 60.6%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.65e-01 92.4% 54.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.32e-01 95.5% 80.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 4.18e-01 80.3% 85.1%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 40.0 3.08e-01 77.3% 32.7%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 2.69e-01 74.2% 23.5%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.75e-01 80.3% 77.5%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 46.0 4.12e-01 100.0% 83.3%
1b8gA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.40e-01 100.0% 57.9%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 42.0 3.74e-01 92.4% 68.7%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 2.85e-01 100.0% 50.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988706 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.83 66.0 6.47e-01 84.8% 91.4%
3781145 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.72 55.0 4.12e-01 83.3% 65.5%
3595807 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 54.0 3.46e-01 84.8% 46.7%
3370941 295.1.1.35 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 0.69 55.0 4.05e-01 84.8% 60.6%
4028495 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 54.0 3.46e-01 86.4% 51.9%
3340789 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.68 55.0 3.41e-01 87.9% 20.3%
3215596 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 51.0 3.41e-01 81.8% 33.5%
3811762 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.66 56.0 3.57e-01 93.9% 54.5%
3178289 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 51.0 3.18e-01 84.8% 76.8%
5032565 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.65 44.0 4.02e-01 78.8% 54.1%
3169468 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 51.0 3.11e-01 87.9% 23.0%
4334199 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.63 53.0 4.43e-01 100.0% 71.2%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 42.0 3.95e-01 71.2% 62.5%
3711634 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 54.0 3.34e-01 100.0% 18.1%
3254597 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.20e-01 93.9% 32.5%
6642 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.60 47.0 3.95e-01 87.9% 69.5%
4057882 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.60 50.0 4.40e-01 97.0% 62.0%
3718225 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.59 50.0 4.02e-01 97.0% 74.3%
4218376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 52.0 4.51e-01 97.0% 65.0%
3700939 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.59 49.0 3.86e-01 95.5% 70.0%
3965099 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 51.0 4.35e-01 95.5% 61.0%
3688114 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.59 49.0 2.94e-01 93.9% 34.3%
1018784 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.59 50.0 4.09e-01 97.0% 75.0%
223484 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 51.0 4.39e-01 97.0% 61.0%
4313104 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 51.0 4.38e-01 97.0% 61.5%
4515677 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 50.0 4.21e-01 97.0% 58.8%
4269649 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 50.0 4.22e-01 95.5% 58.2%
3934912 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.51e-01 86.4% 51.0%
4143716 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 50.0 4.23e-01 97.0% 60.9%
3791851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.70e-01 100.0% 41.4%
3733997 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 50.0 4.06e-01 97.0% 54.4%
3970136 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.57 50.0 4.27e-01 97.0% 62.9%
5069567 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 45.0 4.47e-01 87.9% 97.1%
4336238 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.57 49.0 4.30e-01 97.0% 65.0%
4427813 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.57 49.0 4.21e-01 97.0% 61.0%
3250567 331.18.1.4 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.57 47.0 3.54e-01 95.5% 44.6%
5077962 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.56 42.0 3.43e-01 80.3% 94.4%
4479376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 48.0 4.03e-01 97.0% 56.5%
3834572 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 42.0 3.43e-01 83.3% 84.4%
3279537 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.54 44.0 3.74e-01 97.0% 82.4%
3924724 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 44.0 4.19e-01 92.4% 87.5%
3587052 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 42.0 3.85e-01 92.4% 78.9%
3741401 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.53 40.0 3.19e-01 81.8% 61.5%