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OP751378.1__WAK44700.1__vBAmePPT11V19_00074__00074

Bact-Vir

OP751378.1__WAK44700.1__vBAmePPT11V19_00074__00074

Identity

Accession:
OP751378 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-51
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 55.0 4.61e-01 100.0% 90.4%
1wmhB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 56.0 4.69e-01 100.0% 90.2%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 53.0 4.25e-01 100.0% 82.7%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.39e-01 97.8% 89.2%
1c1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 53.0 4.57e-01 100.0% 90.9%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 53.0 4.44e-01 100.0% 92.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.43e-01 95.7% 89.4%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.21e-01 100.0% 93.5%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 41.0 2.93e-01 71.7% 29.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.37e-01 95.7% 87.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 44.0 4.08e-01 82.6% 96.8%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 49.0 4.20e-01 97.8% 94.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 49.0 4.21e-01 100.0% 92.4%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.59 48.0 3.78e-01 95.7% 67.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.59 44.0 4.12e-01 87.0% 70.5%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.35e-01 97.8% 95.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.58 44.0 3.96e-01 93.5% 85.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 3.91e-01 97.8% 74.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 3.94e-01 100.0% 83.5%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.08e-01 100.0% 92.1%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.72e-01 100.0% 86.3%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.56 42.0 2.81e-01 82.6% 34.6%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.56 49.0 3.06e-01 100.0% 21.9%
3jyuA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 3.81e-01 100.0% 83.3%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 36.0 3.50e-01 100.0% 57.7%
2d4zA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 42.0 3.00e-01 91.3% 52.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 44.0 4.20e-01 100.0% 93.2%
8ci9C01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.55 45.0 2.85e-01 100.0% 20.1%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 2.66e-01 71.7% 23.9%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 38.0 3.27e-01 82.6% 55.4%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 43.0 3.15e-01 91.3% 49.6%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.21e-01 100.0% 74.7%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.18e-01 100.0% 74.1%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 45.0 3.39e-01 100.0% 40.3%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.11e-01 97.8% 92.3%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.53 42.0 3.63e-01 100.0% 75.3%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.35e-01 100.0% 73.7%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 2.80e-01 97.8% 25.7%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 44.0 2.98e-01 100.0% 32.1%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.12e-01 100.0% 40.8%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.03e-01 100.0% 41.4%
2qmiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 41.0 2.48e-01 95.7% 32.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.14e-01 100.0% 40.2%
5yhgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 36.0 2.28e-01 100.0% 13.2%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 3.19e-01 95.7% 80.8%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.54e-01 82.6% 100.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 35.0 3.08e-01 80.4% 61.4%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 40.0 3.18e-01 100.0% 53.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3901407 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.69 47.0 3.72e-01 71.7% 69.5%
3581513 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 47.0 3.92e-01 71.7% 82.5%
3036710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.28e-01 97.8% 93.7%
3617714 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.66 46.0 3.90e-01 71.7% 88.0%
3211717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 44.0 4.74e-01 73.9% 94.3%
3997436 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 56.0 4.19e-01 97.8% 67.8%
3878819 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.65 55.0 4.31e-01 97.8% 72.0%
3272931 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.64 44.0 3.37e-01 71.7% 33.3%
3485847 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.64 54.0 4.34e-01 97.8% 78.9%
3481861 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.63 53.0 4.51e-01 97.8% 93.8%
3501914 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.41e-01 97.8% 87.1%
4937731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.71e-01 95.7% 100.0%
3506970 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.63 53.0 4.44e-01 100.0% 88.2%
3482738 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.30e-01 97.8% 83.3%
3991694 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.63 53.0 4.12e-01 97.8% 69.5%
3954027 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.62 52.0 3.30e-01 100.0% 20.4%
3528939 221.1.1.55 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.62 52.0 3.96e-01 100.0% 84.2%
3925541 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.61 51.0 3.76e-01 97.8% 57.7%
4950348 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 51.0 4.36e-01 100.0% 68.8%
3724182 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 3.07e-01 73.9% 30.4%
3967695 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.61 51.0 4.38e-01 100.0% 92.5%
3819239 221.1.1.13 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA 0.60 51.0 4.12e-01 100.0% 78.9%
3926235 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 49.0 4.24e-01 100.0% 93.8%
3178077 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 50.0 4.27e-01 100.0% 92.5%
3788358 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 3.99e-01 100.0% 86.0%
3402184 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 3.87e-01 100.0% 71.8%
4321108 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 47.0 4.57e-01 97.8% 96.4%
3763290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 3.67e-01 100.0% 53.8%
3592612 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 4.17e-01 100.0% 92.5%
3595320 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.22e-01 91.3% 85.5%
4020715 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.58 48.0 3.74e-01 100.0% 67.3%
3847628 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 47.0 3.88e-01 100.0% 73.7%
4027900 10.30.1.0 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.57 46.0 4.05e-01 100.0% 90.0%
3476233 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 46.0 3.73e-01 100.0% 79.0%
3420348 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.56 43.0 4.17e-01 89.1% 94.5%
4024833 4261.1.1.2 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.56 45.0 3.55e-01 100.0% 54.8%
3974474 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 39.0 3.27e-01 71.7% 36.7%
3927080 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.96e-01 100.0% 67.5%
3505430 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 44.0 3.35e-01 97.8% 56.9%
3722550 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 39.0 2.47e-01 78.3% 27.3%
3267808 101.1.2.625 alpha arrays › HTH › HTH › winged helix domain › BRWD1_N 0.55 39.0 3.42e-01 84.8% 74.1%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.54 41.0 3.57e-01 91.3% 77.6%
4964967 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.54 38.0 2.81e-01 76.1% 27.9%
3244352 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 3.67e-01 100.0% 78.9%
3606610 11.1.1.720 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 0.54 44.0 3.56e-01 97.8% 63.0%
3783859 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.54 43.0 3.41e-01 100.0% 69.5%
3890381 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 38.0 3.36e-01 78.3% 88.7%
4341216 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.54 42.0 2.69e-01 93.5% 74.0%
5051445 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.53 37.0 2.85e-01 78.3% 27.7%
3781795 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 43.0 3.01e-01 100.0% 44.4%
3886750 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 35.0 3.31e-01 71.7% 71.4%
4079808 3351.1.1.0 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.52 36.0 2.99e-01 80.4% 81.9%
3874505 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.52 31.0 3.24e-01 93.5% 57.5%
5010338 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 41.0 3.21e-01 93.5% 67.0%
3267186 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 41.0 3.40e-01 89.1% 51.8%
4547125 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 34.0 3.41e-01 71.7% 74.0%
4079232 3351.1.1.0 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.51 38.0 3.07e-01 89.1% 80.9%
3738154 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.50 37.0 2.92e-01 89.1% 80.0%
D2 medium residues 55-90
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.56 43.0 3.45e-01 91.7% 41.9%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.52 37.0 3.19e-01 83.3% 41.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712152 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.55 45.0 4.02e-01 100.0% 65.5%