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OP751378.1__WAK44719.1__vBAmePPT11V19_00093__00093

Bact-Vir

OP751378.1__WAK44719.1__vBAmePPT11V19_00093__00093

Identity

Accession:
OP751378 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-58_76-93
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.67 47.0 4.13e-01 73.7% 100.0%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.67 48.0 3.70e-01 76.3% 89.9%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.66 45.0 3.89e-01 71.1% 96.8%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.66 57.0 5.46e-01 94.7% 97.7%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 46.0 3.99e-01 73.7% 57.1%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 45.0 3.59e-01 72.4% 99.3%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.64 43.0 3.76e-01 73.7% 45.7%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 40.0 3.10e-01 73.7% 30.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 43.0 4.01e-01 72.4% 100.0%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 44.0 3.34e-01 73.7% 79.7%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 45.0 2.99e-01 76.3% 28.3%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 42.0 3.82e-01 73.7% 52.3%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 43.0 3.31e-01 75.0% 84.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 42.0 3.40e-01 72.4% 60.5%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.61 43.0 3.70e-01 76.3% 97.7%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 4.00e-01 76.3% 60.2%
4cyuA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.60 52.0 4.12e-01 97.4% 99.4%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 42.0 3.50e-01 73.7% 98.5%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.58 41.0 3.13e-01 73.7% 65.7%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.42e-01 97.4% 39.5%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 38.0 2.96e-01 81.6% 31.3%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.57 38.0 3.06e-01 75.0% 37.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 40.0 3.06e-01 73.7% 83.6%
5u81A01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.56 39.0 2.80e-01 75.0% 88.0%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 38.0 3.21e-01 73.7% 64.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.56e-01 100.0% 40.6%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 4.02e-01 97.4% 74.6%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 46.0 3.42e-01 97.4% 46.1%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.43e-01 97.4% 53.1%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 35.0 2.94e-01 75.0% 93.0%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 43.0 3.71e-01 100.0% 69.2%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.44e-01 97.4% 48.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.50 36.0 2.97e-01 96.1% 40.6%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.50 34.0 3.17e-01 71.1% 70.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.75 67.0 5.95e-01 97.4% 83.8%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.74 53.0 5.41e-01 75.0% 76.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 53.0 5.36e-01 75.0% 76.0%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 53.0 5.11e-01 75.0% 67.1%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 53.0 5.15e-01 75.0% 69.9%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 52.0 5.84e-01 75.0% 96.6%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 51.0 5.37e-01 73.7% 80.0%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 52.0 5.02e-01 75.0% 69.4%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 52.0 4.56e-01 75.0% 52.8%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 51.0 5.69e-01 75.0% 98.3%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.71 50.0 5.56e-01 73.7% 98.3%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.71 48.0 5.14e-01 71.1% 92.3%
3218726 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 50.0 4.53e-01 75.0% 63.0%
3595506 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 42.0 3.55e-01 73.7% 38.3%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.69 43.0 4.91e-01 73.7% 94.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 49.0 5.34e-01 75.0% 95.0%
3588755 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.95e-01 75.0% 94.6%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 48.0 5.16e-01 75.0% 90.5%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 46.0 5.13e-01 73.7% 98.2%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 48.0 5.14e-01 75.0% 89.1%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 43.0 4.90e-01 75.0% 98.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 48.0 5.27e-01 75.0% 98.3%
5027230 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.65 42.0 4.04e-01 73.7% 57.6%
5084081 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 46.0 3.45e-01 76.3% 40.0%
5043414 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.64 46.0 3.83e-01 76.3% 100.0%
3501768 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 44.0 4.58e-01 75.0% 77.1%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 45.0 3.53e-01 76.3% 39.4%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 51.0 5.17e-01 93.4% 92.0%
5053865 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 55.0 5.19e-01 97.4% 84.4%
3818615 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 43.0 2.83e-01 73.7% 98.8%
3265154 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.62 44.0 3.75e-01 76.3% 96.9%
1442393 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 51.0 4.56e-01 92.1% 64.2%
4351161 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.61 52.0 3.94e-01 94.7% 86.7%
4945115 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.61 43.0 3.70e-01 76.3% 95.4%
3391863 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.60 42.0 3.22e-01 72.4% 62.9%
5037200 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.60 53.0 4.23e-01 100.0% 51.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 50.0 4.49e-01 92.1% 66.7%
5046604 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.64e-01 73.7% 47.8%
4176188 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.59 42.0 2.79e-01 75.0% 90.5%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 48.0 4.78e-01 92.1% 86.3%
4331814 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 41.0 3.64e-01 73.7% 49.6%
5023452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.59 51.0 4.21e-01 100.0% 53.1%
3239261 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 42.0 2.69e-01 76.3% 18.7%
1395021 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.58 40.0 2.95e-01 72.4% 47.3%
4973378 11.14.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 0.58 40.0 3.92e-01 75.0% 64.7%
4300924 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 40.0 3.57e-01 72.4% 48.7%
3455331 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.58 41.0 2.64e-01 75.0% 100.0%
4490981 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 40.0 3.63e-01 73.7% 51.8%
4298891 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.56 39.0 2.68e-01 73.7% 30.0%
3259296 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 40.0 3.21e-01 75.0% 90.7%
5015214 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.10e-01 72.4% 37.9%
5048110 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.81e-01 85.5% 70.4%
5005269 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 39.0 3.21e-01 76.3% 62.9%
3268480 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 39.0 3.10e-01 76.3% 41.2%
3617619 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 38.0 3.19e-01 75.0% 43.7%
4115981 10.32.1.14 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_11 0.52 37.0 2.95e-01 75.0% 48.2%
3827531 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.52 41.0 2.83e-01 85.5% 100.0%
3594101 301.1.1.0 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.52 44.0 3.49e-01 93.4% 71.0%
327605 233.1.1.8 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.51 37.0 2.81e-01 76.3% 49.7%
3329474 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 45.0 2.87e-01 100.0% 35.9%
D2 medium residues 59-75_94-131
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.57 47.0 4.09e-01 96.4% 74.7%
2ou6A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 45.0 3.23e-01 92.7% 92.3%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.54 38.0 3.40e-01 72.7% 86.8%
3hx0K01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.53 44.0 3.90e-01 92.7% 72.3%
2xhyD00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 43.0 2.57e-01 100.0% 92.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011373 2004.1.1.342 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.58 41.0 2.59e-01 89.1% 11.9%
3276922 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 48.0 4.85e-01 96.4% 100.0%