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OP753453.1__WAB24401.1__X__00026

Bact-Vir

OP753453.1__WAB24401.1__X__00026

Identity

Accession:
OP753453 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_E1

TaxID: 2999105

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-71
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.77 61.0 4.55e-01 85.1% 47.8%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 55.0 5.22e-01 85.1% 63.7%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.72 54.0 5.13e-01 92.5% 66.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 50.0 4.54e-01 73.1% 79.1%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.71 62.0 5.93e-01 100.0% 98.7%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 61.0 4.81e-01 98.5% 46.8%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 61.0 5.23e-01 100.0% 93.5%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 47.0 4.70e-01 73.1% 82.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 54.0 5.29e-01 91.0% 98.6%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 59.0 5.44e-01 100.0% 90.8%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 55.0 5.69e-01 91.0% 100.0%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.65 56.0 4.96e-01 97.0% 73.7%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 45.0 3.95e-01 74.6% 48.6%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 53.0 4.43e-01 97.0% 63.5%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 55.0 4.95e-01 100.0% 97.8%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 51.0 4.53e-01 92.5% 83.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.39e-01 83.6% 80.5%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 45.0 3.75e-01 82.1% 91.9%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 52.0 4.08e-01 98.5% 60.1%
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 50.0 4.18e-01 100.0% 99.2%
3zlaA02 1.10.472.180 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain 0.58 40.0 3.58e-01 73.1% 49.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.58 40.0 4.14e-01 74.6% 85.9%
2d0iA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 39.0 2.86e-01 71.6% 42.7%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 38.0 3.90e-01 86.6% 80.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924801 109.4.1.1643 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.79 72.0 6.34e-01 100.0% 77.9%
3229748 1134.1.1.9 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 0.78 71.0 6.51e-01 100.0% 87.1%
3773905 604.3.1.33 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 0.76 61.0 5.91e-01 86.6% 86.7%
3889971 109.4.1.1643 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.76 68.0 5.77e-01 100.0% 68.2%
3574981 604.12.1.91 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 0.76 65.0 6.46e-01 94.0% 100.0%
3579784 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.75 69.0 5.52e-01 100.0% 82.4%
3806415 4133.1.1.2 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.73 60.0 5.01e-01 91.0% 74.8%
4290271 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.71 61.0 5.60e-01 98.5% 78.9%
3997220 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 61.0 5.11e-01 100.0% 88.7%
3940649 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 58.0 5.56e-01 97.0% 96.2%
4057547 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 48.0 4.11e-01 74.6% 46.4%
3872563 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.68 60.0 5.07e-01 100.0% 86.1%
4206524 605.2.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.68 48.0 4.10e-01 74.6% 46.4%
3718370 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.68 59.0 3.53e-01 97.0% 46.7%
4079591 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 48.0 4.08e-01 74.6% 46.4%
3172116 3922.1.1.317 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF30351 0.68 48.0 4.27e-01 74.6% 61.1%
1806460 604.1.1.8 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SbsC_spectrin-like 0.65 55.0 5.67e-01 95.5% 100.0%
3944357 101.1.1.394 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 0.61 46.0 4.31e-01 83.6% 68.2%
2391543 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 49.0 3.60e-01 100.0% 83.8%
5027469 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.55 44.0 2.68e-01 91.0% 15.9%
3944033 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.54 43.0 3.51e-01 100.0% 43.4%