←Back to structures

OP753453.1__WAB24440.1__X__00065

Bact-Vir

OP753453.1__WAB24440.1__X__00065

Identity

Accession:
OP753453 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_E1

TaxID: 2999105

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: rep: ON529867.1__USN16749.1__STRZYGA_00280__00028__D90-136
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 65.0 5.95e-01 100.0% 73.1%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 67.0 4.89e-01 100.0% 38.5%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 51.0 3.88e-01 78.4% 33.0%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 63.0 4.96e-01 100.0% 48.7%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 62.0 5.73e-01 100.0% 75.0%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 61.0 4.60e-01 100.0% 39.7%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 4.89e-01 92.2% 58.9%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 59.0 5.33e-01 100.0% 69.9%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 58.0 5.24e-01 100.0% 69.4%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.68 46.0 4.81e-01 94.1% 80.4%
5t3eB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.68 53.0 3.38e-01 86.3% 79.8%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 54.0 4.51e-01 100.0% 49.5%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.65 46.0 4.69e-01 98.0% 79.6%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 3.52e-01 84.3% 40.3%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.62 52.0 3.66e-01 100.0% 37.1%
1xn8A00 1.10.3230.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › YqbG-like 0.61 51.0 3.90e-01 98.0% 48.1%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 42.0 3.73e-01 100.0% 50.6%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.59 45.0 3.51e-01 86.3% 84.7%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.57 49.0 3.71e-01 94.1% 50.8%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.57 47.0 3.80e-01 88.2% 70.3%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 4.25e-01 78.4% 95.7%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 45.0 3.95e-01 90.2% 71.8%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 42.0 3.27e-01 86.3% 97.5%
2crwA00 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.54 44.0 3.34e-01 100.0% 56.4%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 44.0 3.12e-01 100.0% 28.4%
3l9vC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 42.0 3.03e-01 98.0% 27.6%
1zgdA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.52 40.0 2.54e-01 88.2% 32.1%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 41.0 3.83e-01 100.0% 74.3%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.52 37.0 2.56e-01 76.5% 68.2%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.85e-01 98.0% 90.8%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.52 40.0 2.94e-01 100.0% 29.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.81 71.0 5.29e-01 100.0% 65.4%
3284690 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.79 65.0 4.68e-01 100.0% 32.0%
4597624 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.78 65.0 4.53e-01 100.0% 29.4%
3366705 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 62.0 5.80e-01 100.0% 70.8%
3667742 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.76 61.0 3.94e-01 100.0% 19.2%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 65.0 5.99e-01 100.0% 77.9%
4633347 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 61.0 6.20e-01 100.0% 94.0%
3959614 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 60.0 5.07e-01 100.0% 52.2%
4315777 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.74 65.0 4.74e-01 100.0% 36.4%
4210562 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.74 62.0 5.94e-01 100.0% 83.3%
4028059 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 61.0 5.97e-01 100.0% 87.3%
3579672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 60.0 5.93e-01 98.0% 87.3%
3983963 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.72 63.0 5.02e-01 100.0% 73.3%
4564509 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.72 61.0 5.86e-01 100.0% 86.7%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.72 61.0 6.04e-01 100.0% 98.1%
3849756 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 58.0 5.22e-01 100.0% 64.0%
4292036 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 59.0 5.63e-01 98.0% 80.0%
4460243 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 61.0 5.98e-01 100.0% 90.9%
4100614 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 61.0 6.00e-01 100.0% 90.9%
4127906 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 57.0 5.65e-01 98.0% 87.3%
4640858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 57.0 5.08e-01 100.0% 62.7%
4401871 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 58.0 5.74e-01 98.0% 87.3%
4191032 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.70 59.0 6.01e-01 100.0% 98.0%
4390858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 58.0 5.90e-01 100.0% 96.0%
3268224 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 58.0 5.68e-01 98.0% 87.3%
4553544 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.69 58.0 3.99e-01 100.0% 26.2%
4188102 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 58.0 5.33e-01 100.0% 72.9%
3395038 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 56.0 5.30e-01 98.0% 78.5%
4957076 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.67 53.0 5.06e-01 88.2% 81.7%
5024287 103.5.1.11 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 0.67 57.0 5.12e-01 100.0% 77.3%
3960386 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 56.0 5.38e-01 98.0% 91.7%
3899147 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.65 38.0 3.40e-01 92.2% 41.4%
3670430 2003.1.1.119 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CER1-like_C 0.63 51.0 3.56e-01 98.0% 95.9%
5023730 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.62 53.0 3.92e-01 100.0% 96.6%
3165775 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.61 48.0 4.28e-01 84.3% 75.7%
3532102 4336.2.1.4 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › CEP76_N 0.59 41.0 3.86e-01 74.5% 93.8%
3955313 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.59 48.0 3.19e-01 100.0% 35.1%
3965413 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 46.0 3.10e-01 100.0% 36.1%
3282378 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 47.0 3.12e-01 100.0% 22.9%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.57 47.0 4.26e-01 100.0% 74.7%
3971161 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.56 45.0 4.11e-01 90.2% 81.4%
4970130 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 43.0 2.93e-01 100.0% 33.2%
56812 620.1.1.0 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.54 44.0 3.11e-01 100.0% 28.1%
2392399 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 42.0 3.91e-01 100.0% 73.2%