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OP793884.1__UZV41106.1__vBVpaMR16F_40__00040

Bact-Vir

OP793884.1__UZV41106.1__vBVpaMR16F_40__00040

Identity

Accession:
OP793884 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-37
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.63 47.0 2.94e-01 100.0% 14.3%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.63 44.0 2.88e-01 77.8% 24.0%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.62 40.0 2.75e-01 97.2% 19.2%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 45.0 3.20e-01 97.2% 28.2%
1ttzA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 48.0 3.84e-01 91.7% 86.7%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 45.0 4.49e-01 100.0% 87.2%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 39.0 2.67e-01 97.2% 19.2%
3mcwA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.59 42.0 2.82e-01 88.9% 73.8%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 48.0 3.72e-01 100.0% 83.0%
7miqA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 46.0 3.82e-01 94.4% 98.7%
4id0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 46.0 3.64e-01 100.0% 85.9%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 47.0 3.26e-01 100.0% 53.4%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.47e-01 100.0% 36.1%
3r2qA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 44.0 3.58e-01 100.0% 86.5%
3gygC01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 44.0 2.78e-01 86.1% 87.3%
3q18A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 44.0 3.30e-01 100.0% 65.0%
3gwaA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 37.0 2.39e-01 100.0% 11.8%
4e8uA00 3.30.70.2890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain 0.58 44.0 2.94e-01 86.1% 49.4%
3m0fA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 47.0 3.81e-01 100.0% 93.7%
4gf0A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 46.0 3.58e-01 100.0% 80.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.42e-01 97.2% 38.8%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.24e-01 100.0% 34.9%
6tuaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 41.0 2.70e-01 83.3% 38.7%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 44.0 2.63e-01 86.1% 34.0%
3nznA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 40.0 3.07e-01 83.3% 70.9%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.56 39.0 2.98e-01 97.2% 29.7%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.08e-01 94.4% 32.6%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 46.0 2.59e-01 94.4% 19.6%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.55 43.0 3.20e-01 100.0% 93.2%
1w2lA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.55 40.0 3.22e-01 97.2% 52.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 41.0 2.61e-01 94.4% 85.7%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.55 44.0 2.56e-01 94.4% 20.5%
4ml1A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 41.0 2.91e-01 86.1% 86.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.48e-01 100.0% 48.5%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.32e-01 100.0% 39.3%
2xrcA02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 37.0 3.39e-01 72.2% 52.1%
4yapA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.10e-01 100.0% 61.1%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.54 38.0 2.48e-01 100.0% 15.6%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 40.0 3.18e-01 91.7% 40.2%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.53 42.0 3.66e-01 100.0% 68.8%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.53 41.0 2.87e-01 94.4% 92.5%
3ubtA02 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.52 37.0 2.74e-01 100.0% 38.4%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 42.0 3.10e-01 94.4% 49.6%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.52 43.0 2.76e-01 100.0% 67.0%
3p5pA02 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 45.0 2.82e-01 100.0% 18.8%
3zqcA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 39.0 3.50e-01 100.0% 64.1%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 39.0 2.40e-01 100.0% 69.3%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 43.0 3.06e-01 100.0% 50.0%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 42.0 2.96e-01 94.4% 40.5%
6ifdB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 45.0 2.74e-01 100.0% 52.6%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.70e-01 88.9% 26.7%
3ir4A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 3.15e-01 91.7% 85.9%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 36.0 2.23e-01 100.0% 32.5%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.72e-01 91.7% 29.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.51e-01 100.0% 66.7%
1h0zA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.50 39.0 3.38e-01 97.2% 73.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706636 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 44.0 3.35e-01 100.0% 28.7%
4890925 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.67 40.0 2.72e-01 97.2% 15.0%
5010522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 42.0 3.14e-01 100.0% 23.6%
3184127 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 49.0 3.98e-01 91.7% 90.7%
4141898 7561.1.1.1 a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.62 46.0 3.02e-01 88.9% 77.8%
3447770 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 48.0 4.84e-01 97.2% 94.3%
5040756 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.61 42.0 3.12e-01 100.0% 28.4%
1196877 2485.1.1.40 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 0.60 45.0 3.89e-01 100.0% 93.3%
3638158 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.60 49.0 3.18e-01 100.0% 69.2%
3245428 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 41.0 3.97e-01 72.2% 65.0%
4164380 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 49.0 3.86e-01 97.2% 85.0%
3895011 11.1.1.852 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.58 41.0 2.77e-01 75.0% 25.0%
4283451 2003.1.3.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.58 46.0 2.75e-01 97.2% 11.5%
4952854 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 44.0 3.80e-01 97.2% 50.8%
3173752 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.58 44.0 2.40e-01 86.1% 73.2%
4964421 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 43.0 3.74e-01 97.2% 50.8%
4947701 101.1.2.882 alpha arrays › HTH › HTH › winged helix domain › FeoA 0.57 49.0 3.60e-01 100.0% 68.0%
3876665 2485.1.1.100 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Tom37 0.57 46.0 3.64e-01 94.4% 88.2%
3655168 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 39.0 2.23e-01 72.2% 6.5%
3667490 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 47.0 2.94e-01 100.0% 68.5%
5040230 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 43.0 3.72e-01 97.2% 50.8%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.19e-01 100.0% 36.0%
3971416 109.1.1.37 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_2 0.56 45.0 2.91e-01 100.0% 76.2%
3719038 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 2.50e-01 75.0% 14.0%
3198699 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.56 42.0 2.78e-01 94.4% 21.5%
3287098 317.1.1.6 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N 0.56 38.0 2.48e-01 72.2% 42.2%
4963651 101.1.2.926 alpha arrays › HTH › HTH › winged helix domain › DUF7346 0.55 46.0 3.61e-01 100.0% 81.2%
4946421 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.55 45.0 2.47e-01 97.2% 57.4%
3283003 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 38.0 3.07e-01 86.1% 35.7%
3205161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 2.94e-01 100.0% 29.5%
3480592 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 45.0 3.87e-01 97.2% 86.7%
4980050 620.1.1.0 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.54 42.0 3.04e-01 97.2% 48.6%
3608522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 2.12e-01 75.0% 5.3%
3883846 11.1.1.852 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.54 37.0 2.59e-01 75.0% 25.0%
3498240 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 43.0 2.62e-01 94.4% 90.4%
4854145 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.54 45.0 3.10e-01 100.0% 59.3%
4989447 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 43.0 3.40e-01 100.0% 75.3%
4210079 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.51e-01 100.0% 44.7%
4939370 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.29e-01 100.0% 84.0%
3420893 2003.1.1.134 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Exostosin_GT47 0.53 43.0 2.74e-01 94.4% 47.5%
3357775 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 40.0 3.22e-01 100.0% 82.2%
4933561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.52 32.0 2.86e-01 94.4% 38.2%
5070666 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.52 37.0 3.26e-01 100.0% 50.9%
3284779 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 39.0 2.84e-01 94.4% 48.8%
3668711 109.4.1.916 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B 0.51 36.0 2.15e-01 88.9% 8.8%
3481078 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.51 34.0 3.54e-01 75.0% 75.8%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.51 40.0 3.51e-01 88.9% 89.1%
4965674 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 38.0 3.61e-01 94.4% 70.0%
4027091 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.51 39.0 3.55e-01 94.4% 83.6%
3588934 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 35.0 3.05e-01 97.2% 40.0%
4945146 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.51 35.0 3.40e-01 86.1% 94.0%
3536237 11.1.1.852 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.51 39.0 2.81e-01 97.2% 89.6%
4977918 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.50 43.0 3.23e-01 100.0% 44.2%
3498627 7015.1.1.1 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.50 34.0 2.24e-01 91.7% 13.7%
3383341 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 43.0 2.53e-01 100.0% 54.2%