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OP793884.1__UZV41111.1__vBVpaMR16F_45__00045

Bact-Vir

OP793884.1__UZV41111.1__vBVpaMR16F_45__00045

Identity

Accession:
OP793884 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VpaM_R16F

TaxID: 2996088

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-55
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 53.0 4.26e-01 100.0% 95.1%
4b3lA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 42.0 2.44e-01 75.0% 9.8%
2ja2A03 1.10.1160.10 Mainly Alpha › Orthogonal Bundle › Glutamyl-tRNA Synthetase; domain 2 › Glutamyl-trna Synthetase; Domain 2 0.59 40.0 3.49e-01 94.2% 44.0%
4zkdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 3.07e-01 98.1% 90.4%
2xauA04 1.10.10.2130 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DEAH helicase family, winged-helix domain 0.52 33.0 3.41e-01 71.2% 70.2%
3lxuX03 6.10.250.3080 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 35.0 3.34e-01 71.2% 71.0%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 40.0 3.38e-01 88.5% 89.4%
4upkA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 45.0 2.64e-01 100.0% 11.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 41.0 3.66e-01 98.1% 44.3%
3689543 3922.1.1.227 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 0.66 45.0 3.82e-01 71.2% 87.1%
4789520 3719.1.1.0 ↗ alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like 0.65 44.0 4.18e-01 71.2% 77.8%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.61 38.0 3.91e-01 98.1% 66.0%
4169714 3754.1.1.2 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1 0.60 50.0 3.09e-01 100.0% 99.2%
3284779 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.59 48.0 3.79e-01 98.1% 76.0%
3282549 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 45.0 3.61e-01 94.2% 72.2%
4357827 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.55 49.0 4.46e-01 100.0% 91.3%
3170733 109.4.1.3117 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30095 0.55 39.0 2.64e-01 80.8% 18.4%
4996689 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 42.0 2.75e-01 92.3% 19.6%
4945136 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 40.0 2.55e-01 84.6% 33.1%
3802854 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.51 35.0 2.08e-01 88.5% 8.6%
4962698 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 43.0 2.99e-01 100.0% 29.7%