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OP795451.1__WAK44842.1__X__00020

Bact-Vir

OP795451.1__WAK44842.1__X__00020

Identity

Accession:
OP795451 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PseuP_224

TaxID: 2996096

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-69
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13991.12 best BssS 57.8 1.40e-15 100.0% 83.3%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.67 46.0 3.42e-01 73.3% 39.7%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.65 45.0 2.95e-01 71.7% 19.9%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 46.0 3.61e-01 83.3% 35.1%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.63 43.0 3.45e-01 71.7% 77.7%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.63 34.0 2.67e-01 98.3% 22.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 43.0 4.31e-01 71.7% 73.3%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.62 49.0 4.02e-01 88.3% 46.6%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.62 42.0 3.38e-01 70.0% 78.0%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 55.0 4.09e-01 100.0% 51.9%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 4.31e-01 88.3% 58.2%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 46.0 3.00e-01 85.0% 98.4%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.61 42.0 3.84e-01 73.3% 60.7%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 48.0 3.65e-01 86.7% 64.8%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 3.26e-01 76.7% 72.3%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 51.0 4.29e-01 100.0% 53.2%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.36e-01 73.3% 94.4%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.60 47.0 3.45e-01 85.0% 88.4%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.47e-01 73.3% 69.5%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 46.0 3.44e-01 90.0% 33.1%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 47.0 2.92e-01 86.7% 15.8%
1i12D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 39.0 2.88e-01 93.3% 26.1%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 47.0 3.80e-01 93.3% 44.0%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 3.73e-01 98.3% 54.7%
1mehA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 49.0 3.08e-01 96.7% 84.2%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 36.0 2.34e-01 95.0% 13.9%
6btdA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.58 48.0 3.32e-01 91.7% 79.3%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.57 47.0 3.71e-01 93.3% 63.6%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 39.0 3.49e-01 73.3% 79.3%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.56 40.0 3.35e-01 78.3% 43.5%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 47.0 3.21e-01 96.7% 74.3%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 36.0 2.87e-01 70.0% 29.0%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.55 43.0 3.53e-01 88.3% 58.0%
1usuB00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.55 44.0 3.46e-01 88.3% 73.5%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 38.0 3.39e-01 100.0% 51.2%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.11e-01 96.7% 54.5%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 3.82e-01 93.3% 66.0%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.54 39.0 3.08e-01 78.3% 62.2%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.70e-01 85.0% 86.0%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.54 43.0 3.49e-01 91.7% 63.4%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 46.0 2.98e-01 100.0% 25.7%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.01e-01 85.0% 40.3%
4zfvB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.02e-01 93.3% 88.2%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.33e-01 93.3% 77.1%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 41.0 3.48e-01 95.0% 77.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944524 295.1.1.26 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › BssS 0.84 74.0 7.00e-01 96.7% 82.9%
3775621 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.67 47.0 3.79e-01 75.0% 45.8%
5047600 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 47.0 3.58e-01 73.3% 81.5%
5024957 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.67 46.0 4.16e-01 80.0% 54.4%
3651563 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.66 54.0 4.33e-01 95.0% 44.8%
3787221 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.66 55.0 3.82e-01 100.0% 26.6%
4952012 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 46.0 2.89e-01 73.3% 76.4%
3705745 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.65 53.0 4.14e-01 90.0% 81.5%
4979396 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.65 46.0 3.50e-01 80.0% 31.0%
5016404 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 51.0 4.66e-01 86.7% 66.3%
4189433 223.1.1.81 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.65 45.0 3.10e-01 73.3% 60.0%
3477604 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.05e-01 96.7% 53.1%
4606510 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.64 52.0 4.71e-01 93.3% 65.9%
4952008 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 45.0 3.25e-01 73.3% 67.3%
3426315 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 43.0 3.84e-01 71.7% 55.6%
5074611 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.63 56.0 5.08e-01 100.0% 95.0%
3398694 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.63 54.0 4.55e-01 100.0% 58.1%
3231135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 4.05e-01 93.3% 47.3%
5057921 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 49.0 3.25e-01 85.0% 31.0%
4978995 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 48.0 3.16e-01 83.3% 34.7%
3791593 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 3.93e-01 100.0% 39.3%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 52.0 3.79e-01 100.0% 35.1%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 53.0 4.66e-01 98.3% 85.6%
3635930 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 41.0 3.14e-01 76.7% 28.4%
3419015 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 42.0 4.45e-01 76.7% 94.0%
3708818 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.81e-01 88.3% 53.0%
3174159 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 44.0 3.45e-01 83.3% 57.0%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.02e-01 85.0% 73.4%
3739228 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.56 41.0 2.75e-01 78.3% 71.8%
3512127 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.56 44.0 3.71e-01 91.7% 51.3%
3607858 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 46.0 4.01e-01 100.0% 66.7%
3617021 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.56 45.0 3.61e-01 93.3% 42.2%
3519916 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 41.0 3.62e-01 81.7% 97.9%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.62e-01 100.0% 43.7%
5051386 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.27e-01 90.0% 35.0%
4560015 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 42.0 3.94e-01 83.3% 92.0%
3257803 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.55 44.0 3.11e-01 95.0% 98.6%
3937193 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.55 42.0 3.13e-01 91.7% 30.3%
3774553 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.55 45.0 2.99e-01 91.7% 68.5%
5051116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.27e-01 90.0% 37.3%
3375728 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 45.0 3.54e-01 98.3% 81.4%
3383629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.60e-01 100.0% 59.3%
3427136 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.69e-01 100.0% 61.5%
3514322 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.54 40.0 3.08e-01 90.0% 30.9%
3790199 64.5.1.0 ↗ beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.54 36.0 3.66e-01 83.3% 70.0%
4030631 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 46.0 3.23e-01 98.3% 56.6%
3242923 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.63e-01 98.3% 50.8%
3803140 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.70e-01 100.0% 51.3%
4400500 223.1.1.132 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.53 36.0 2.37e-01 71.7% 40.0%
3941747 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.53 43.0 3.51e-01 88.3% 83.6%
4943853 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.28e-01 91.7% 37.9%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 44.0 3.79e-01 93.3% 79.8%
3300115 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.52 39.0 3.38e-01 85.0% 74.3%
3625217 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.52 40.0 2.97e-01 91.7% 28.5%
3261701 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.56e-01 93.3% 55.2%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 38.0 3.21e-01 86.7% 43.2%
4379531 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.52 37.0 2.68e-01 78.3% 62.6%
5052575 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 2.95e-01 91.7% 29.4%
5053150 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.02e-01 88.3% 34.8%
3701080 2485.1.1.78 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Suc_Fer-like 0.51 42.0 3.24e-01 95.0% 59.3%
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.51 41.0 3.84e-01 98.3% 86.3%
3710596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.27e-01 98.3% 42.8%