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OP797801.1__UZV40937.1__SPG4_49__00049

Bact-Vir

OP797801.1__UZV40937.1__SPG4_49__00049

Identity

Accession:
OP797801 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_vB_SauS_SPG4

TaxID: 2996104

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-124
PDB
Domain cluster: rep: NC_070786.1__YP_010652336.1__PP460_gp222__00022__D22-123
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10651.16 best BppU_N 108.8 2.70e-31 100.0% 81.9%
D2 medium residues 251-300
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.61 41.0 4.09e-01 100.0% 65.5%
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 48.0 3.56e-01 96.0% 75.0%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 40.0 2.94e-01 86.0% 25.2%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 42.0 3.44e-01 96.0% 42.6%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 43.0 3.20e-01 96.0% 72.1%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.53e-01 76.0% 54.5%
1m1jE01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 37.0 2.72e-01 82.0% 25.3%
6mv2A03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 40.0 3.05e-01 90.0% 55.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 2.38e-01 72.0% 29.5%
1l1qA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 2.94e-01 98.0% 67.4%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 41.0 2.93e-01 100.0% 28.7%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 39.0 3.08e-01 88.0% 61.1%
2h85A02 3.40.50.11580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › nsp15 middle domain 0.50 42.0 3.26e-01 100.0% 54.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033339 520.1.1.2 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.96 90.0 7.34e-01 100.0% 58.8%
4929012 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.60 48.0 4.01e-01 98.0% 49.0%
3603956 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 43.0 2.86e-01 84.0% 24.7%
4976459 3688.1.1.1 ↗ a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N 0.57 47.0 3.97e-01 98.0% 54.4%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.56 42.0 3.51e-01 94.0% 44.2%
5008475 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.56 44.0 3.11e-01 96.0% 33.2%
3593385 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.55 44.0 3.03e-01 100.0% 25.8%
3951194 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.55 39.0 2.95e-01 84.0% 51.6%
3355276 328.6.1.2 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.54 43.0 3.30e-01 100.0% 61.4%
3831339 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.54 42.0 2.77e-01 94.0% 26.4%
3954157 7573.1.1.9 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran, Pribosyl_synth 0.53 41.0 2.99e-01 94.0% 75.9%
3617912 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 40.0 3.17e-01 86.0% 40.8%
3689665 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.53 41.0 2.54e-01 96.0% 38.5%
3940986 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 41.0 3.71e-01 98.0% 62.7%
4987784 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.52 42.0 2.66e-01 92.0% 21.5%
3236190 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 42.0 2.86e-01 96.0% 28.8%
3214289 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 39.0 3.13e-01 86.0% 39.1%
4015200 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 40.0 2.74e-01 94.0% 54.1%
3930204 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.03e-01 86.0% 65.0%
3036116 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.51 40.0 3.10e-01 94.0% 55.2%
5014205 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.51 39.0 2.94e-01 98.0% 35.6%
3744609 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.50 38.0 2.72e-01 94.0% 30.7%