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OP807343.1__WBM89738.1__X__00008

Bact-Vir

OP807343.1__WBM89738.1__X__00008

Identity

Accession:
OP807343 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lacticaseibacillus_phage_P7.1

TaxID: 3016940

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 283-363
PDB
D2 medium residues 12-62
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 34.0 2.44e-01 88.2% 16.2%
2o0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 34.0 2.11e-01 86.3% 8.7%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.59 42.0 3.03e-01 78.4% 68.3%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.57 40.0 3.96e-01 80.4% 79.7%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.57 43.0 3.10e-01 82.4% 60.3%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.57 43.0 3.18e-01 84.3% 64.4%
5lp7E01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 47.0 3.10e-01 90.2% 90.1%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 38.0 2.95e-01 72.5% 82.5%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.61e-01 78.4% 62.7%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.55 41.0 2.65e-01 84.3% 46.5%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 2.82e-01 72.5% 91.5%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 2.81e-01 78.4% 27.1%
3tvkA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 39.0 2.73e-01 76.5% 51.2%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.54 35.0 3.36e-01 70.6% 59.6%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.53 37.0 2.56e-01 78.4% 18.5%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 36.0 2.37e-01 72.5% 52.0%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 37.0 3.44e-01 74.5% 88.9%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.70e-01 84.3% 52.9%
5mp7A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.57e-01 74.5% 94.4%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 37.0 3.31e-01 74.5% 81.7%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.58e-01 96.1% 33.5%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.27e-01 96.1% 85.7%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 40.0 2.85e-01 86.3% 89.2%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 38.0 2.55e-01 84.3% 47.8%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 37.0 2.98e-01 82.4% 46.8%
1vyiA00 1.20.120.820 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain 0.50 38.0 3.10e-01 88.2% 44.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.75 35.0 3.28e-01 84.3% 34.9%
3928213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 33.0 2.46e-01 88.2% 20.0%
4966155 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 36.0 2.68e-01 92.2% 20.8%
3622068 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.66 30.0 2.41e-01 84.3% 22.2%
5080319 7524.1.1.2 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.61 37.0 2.43e-01 98.0% 13.5%
3632211 2485.1.1.10 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA 0.59 43.0 2.88e-01 78.4% 20.5%
4279139 3819.2.1.1 ↗ alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › Csx12 0.59 41.0 2.29e-01 76.5% 44.3%
5049161 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.59 43.0 2.83e-01 78.4% 64.3%
4011414 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 40.0 2.67e-01 72.5% 18.1%
3668417 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.58 41.0 3.16e-01 76.5% 31.7%
3370099 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.58 43.0 3.35e-01 82.4% 89.6%
3608755 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 40.0 3.45e-01 72.5% 52.9%
4880916 3207.1.1.1 ↗ alpha bundles › PmoA › PmoA › PmoA › AMO 0.57 42.0 2.79e-01 88.2% 74.4%
3865234 7581.1.1.22 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.57 47.0 2.92e-01 92.2% 90.4%
3924514 109.4.1.83 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.55 40.0 2.48e-01 76.5% 15.5%
3921376 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 47.0 2.66e-01 100.0% 97.0%
4922053 5093.1.1.4 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly, Fibritin_C 0.55 40.0 2.47e-01 86.3% 19.9%
1504755 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.55 30.0 3.31e-01 86.3% 51.2%
4874950 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 38.0 2.73e-01 74.5% 54.5%
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 40.0 3.43e-01 86.3% 57.8%
3409557 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.53 43.0 2.79e-01 92.2% 78.8%
3781870 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.52 38.0 3.27e-01 80.4% 70.6%
1515972 206.1.1.33 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › OspG_kinase 0.52 37.0 2.58e-01 74.5% 34.4%
4024568 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 35.0 2.22e-01 70.6% 70.0%
4274656 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.51 38.0 2.78e-01 80.4% 40.0%
3731940 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.50 38.0 2.65e-01 100.0% 54.5%
D3 medium residues 63-101_135-165_382-392_405-449
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yukA02 6.20.50.10 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 13.0 2.65e-01 87.3% 65.7%
D4 medium residues 102-134_242-282_364-381_393-404
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 23.0 2.79e-01 94.2% 50.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3382543 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 25.0 2.69e-01 98.1% 41.1%
3177987 109.4.1.549 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS 0.54 37.0 2.34e-01 71.2% 37.3%
4998335 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 22.0 2.55e-01 94.2% 49.3%
D5 medium residues 166-241
PDB
Domain cluster: rep: ON741189.1__UTQ80164.1__vBBceSLY4_000087__00087__D2-65
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.72 50.0 4.88e-01 85.5% 65.5%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.71 55.0 4.33e-01 94.7% 41.3%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.70 58.0 3.80e-01 88.2% 37.5%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.69 47.0 3.77e-01 89.5% 35.8%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.68 50.0 4.68e-01 82.9% 63.7%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.68 50.0 3.48e-01 77.6% 82.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 47.0 5.21e-01 94.7% 93.2%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 61.0 4.61e-01 100.0% 94.9%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.67 55.0 3.71e-01 88.2% 39.6%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 44.0 3.59e-01 89.5% 37.5%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 47.0 3.21e-01 92.1% 20.5%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.64 57.0 3.99e-01 98.7% 49.6%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 52.0 4.34e-01 88.2% 84.6%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.64 45.0 4.10e-01 89.5% 55.4%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.63 55.0 3.68e-01 96.1% 39.8%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 57.0 3.75e-01 100.0% 81.7%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.61 55.0 3.68e-01 100.0% 92.2%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 53.0 3.37e-01 93.4% 93.0%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 40.0 3.57e-01 76.3% 46.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.59 50.0 4.15e-01 93.4% 77.2%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.59 48.0 4.60e-01 88.2% 97.7%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.59 45.0 3.73e-01 82.9% 46.4%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.59 47.0 4.33e-01 93.4% 67.3%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.59 50.0 3.01e-01 92.1% 49.5%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.63e-01 84.2% 47.5%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.59 50.0 3.01e-01 92.1% 50.5%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 50.0 3.06e-01 92.1% 58.1%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 46.0 3.72e-01 86.8% 98.7%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 3.91e-01 84.2% 98.3%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.96e-01 86.8% 61.1%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.58e-01 86.8% 46.8%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 50.0 3.13e-01 96.1% 93.9%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 51.0 4.13e-01 100.0% 51.7%
1c16A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 49.0 3.94e-01 100.0% 93.9%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.53e-01 88.2% 45.1%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 39.0 4.19e-01 82.9% 87.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 50.0 3.84e-01 100.0% 44.3%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 48.0 3.31e-01 100.0% 89.7%
1t5rB00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 45.0 3.18e-01 94.7% 81.2%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 41.0 3.65e-01 80.3% 64.5%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.18e-01 98.7% 35.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 36.0 3.87e-01 80.3% 84.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.47e-01 89.5% 51.6%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 40.0 2.98e-01 89.5% 96.3%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 42.0 3.77e-01 94.7% 85.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581254 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.77 54.0 6.16e-01 89.5% 100.0%
4009799 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.74 49.0 4.39e-01 84.2% 49.5%
4655950 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.74 53.0 4.57e-01 86.8% 49.6%
5035736 71.1.1.26 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 0.73 53.0 4.01e-01 85.5% 33.5%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.72 54.0 5.35e-01 100.0% 75.0%
3984883 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.71 51.0 4.43e-01 90.8% 49.6%
2141857 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.70 51.0 3.37e-01 92.1% 19.7%
3289119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 49.0 3.08e-01 73.7% 15.1%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.69 47.0 3.70e-01 89.5% 33.8%
3425790 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.69 54.0 5.04e-01 89.5% 67.4%
1866758 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.68 50.0 4.68e-01 82.9% 63.7%
3461283 77.1.1.8 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28611 0.68 51.0 4.64e-01 93.4% 61.2%
5047426 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.68 48.0 4.13e-01 82.9% 48.7%
3606839 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 50.0 4.17e-01 86.8% 46.2%
1144020 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 61.0 4.61e-01 100.0% 94.9%
3794870 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.67 60.0 4.69e-01 100.0% 80.6%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 54.0 4.25e-01 98.7% 43.2%
6689 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.66 52.0 4.41e-01 100.0% 51.6%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 45.0 3.56e-01 89.5% 33.8%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 44.0 4.50e-01 84.2% 72.0%
3924297 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.65 51.0 4.69e-01 90.8% 65.0%
3972681 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 50.0 4.70e-01 85.5% 68.1%
3921483 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.64 46.0 3.11e-01 90.8% 19.7%
3921815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 3.72e-01 93.4% 29.8%
4511741 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.64 45.0 4.27e-01 92.1% 62.2%
3257844 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.63 43.0 3.15e-01 89.5% 26.5%
3272624 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.63 54.0 4.50e-01 100.0% 54.6%
4075543 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 48.0 3.17e-01 94.7% 20.1%
5047928 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.62 50.0 4.32e-01 88.2% 84.2%
1413889 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.62 43.0 4.13e-01 89.5% 61.5%
3203571 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.62 47.0 3.94e-01 90.8% 45.7%
3398404 220.1.1.42 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.62 50.0 4.13e-01 89.5% 83.6%
4086554 11.10.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.62 57.0 4.63e-01 100.0% 74.8%
3255874 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.62 53.0 3.94e-01 94.7% 41.0%
973647 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.62 50.0 3.54e-01 89.5% 88.7%
3980013 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.61 51.0 3.16e-01 94.7% 16.4%
4932771 11.1.1.1128 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27408 0.61 53.0 4.19e-01 94.7% 88.7%
6374 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 47.0 4.07e-01 89.5% 52.0%
1569478 527.1.1.1 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Orthopox_35kD 0.60 52.0 4.12e-01 94.7% 68.6%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 49.0 4.75e-01 88.2% 80.0%
4169235 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.60 43.0 3.65e-01 84.2% 46.3%
5029047 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 41.0 3.37e-01 89.5% 36.7%
None — 0.60 46.0 4.01e-01 89.5% 52.0%
3074009 9.1.1.31 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC 0.60 48.0 4.02e-01 88.2% 54.9%
5044863 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.60 48.0 4.02e-01 86.8% 51.5%
3769924 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.60 47.0 3.98e-01 86.8% 54.6%
5047424 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 49.0 4.18e-01 89.5% 84.2%
3308552 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.59 53.0 4.43e-01 98.7% 100.0%
5044324 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.59 50.0 4.21e-01 89.5% 80.8%
5033097 5084.5.1.70 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF1302 0.59 51.0 3.17e-01 94.7% 22.5%
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 51.0 4.00e-01 100.0% 44.8%
5037572 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.59 52.0 4.36e-01 96.1% 80.0%
5046132 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 51.0 3.55e-01 100.0% 36.9%
4113988 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.58 49.0 3.02e-01 92.1% 57.9%
3230598 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 48.0 4.02e-01 100.0% 68.7%
3933484 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.57 48.0 3.90e-01 100.0% 80.0%
3619712 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 50.0 3.03e-01 98.7% 28.5%
5000965 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.57 44.0 4.18e-01 86.8% 70.0%
4096366 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 42.0 3.60e-01 82.9% 48.0%
3895929 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 44.0 4.07e-01 85.5% 95.0%
3438237 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.56 46.0 3.22e-01 89.5% 69.4%
3243473 5087.1.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.55 48.0 3.31e-01 96.1% 88.4%
5078009 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 49.0 3.16e-01 100.0% 79.7%
5037445 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 47.0 3.31e-01 100.0% 37.7%
3786831 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.54 46.0 2.94e-01 100.0% 27.5%
4497101 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.54 43.0 4.07e-01 85.5% 74.2%
5049570 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 48.0 3.41e-01 100.0% 36.5%
3976326 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.53 46.0 3.55e-01 100.0% 92.2%
4666811 243.3.1.51 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › HalC8_like_N 0.52 44.0 3.62e-01 97.4% 50.3%
D6 medium residues 450-494
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8h4pA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.76 66.0 3.96e-01 100.0% 30.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 58.0 4.54e-01 84.4% 56.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 58.0 4.67e-01 84.4% 58.3%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.71 46.0 3.48e-01 80.0% 27.3%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.71 55.0 3.71e-01 84.4% 37.4%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 54.0 4.37e-01 88.9% 43.7%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.91e-01 88.9% 62.3%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.36e-01 88.9% 50.7%
2x0sA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.68 58.0 5.10e-01 93.3% 100.0%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.73e-01 88.9% 62.3%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 54.0 4.89e-01 97.8% 69.1%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 3.78e-01 86.7% 30.2%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.09e-01 88.9% 41.5%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.05e-01 88.9% 47.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 3.72e-01 88.9% 28.4%
1kblA02 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.66 57.0 5.03e-01 93.3% 100.0%
1vbgA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.66 56.0 4.99e-01 93.3% 100.0%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.47e-01 88.9% 57.5%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 43.0 3.45e-01 71.1% 35.7%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.51e-01 88.9% 61.3%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.22e-01 88.9% 44.9%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.46e-01 88.9% 59.2%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.47e-01 88.9% 60.3%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.65 55.0 4.69e-01 97.8% 62.7%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.25e-01 86.7% 54.2%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.35e-01 88.9% 57.7%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 3.71e-01 88.9% 36.5%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.21e-01 88.9% 57.8%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 3.80e-01 97.8% 34.8%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.64e-01 88.9% 76.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.20e-01 88.9% 56.7%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.30e-01 88.9% 62.3%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.25e-01 100.0% 72.3%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.40e-01 88.9% 69.1%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 52.0 4.73e-01 100.0% 73.0%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.59e-01 84.4% 89.7%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.32e-01 88.9% 64.5%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.78e-01 97.8% 80.8%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.32e-01 88.9% 67.2%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 48.0 3.21e-01 93.3% 61.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 44.0 4.10e-01 88.9% 62.3%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 42.0 4.13e-01 88.9% 72.9%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 47.0 3.19e-01 95.6% 76.2%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.69e-01 88.9% 51.4%
2cu7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 44.0 4.33e-01 97.8% 84.0%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.56 48.0 3.43e-01 100.0% 55.3%
1kcxA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 45.0 2.67e-01 93.3% 22.0%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 37.0 3.81e-01 88.9% 82.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.52e-01 95.6% 53.1%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 40.0 3.33e-01 88.9% 44.7%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.53 40.0 2.97e-01 91.1% 32.7%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.84e-01 91.1% 51.4%
1iv8A03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.52 45.0 3.71e-01 97.8% 76.5%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 44.0 3.86e-01 100.0% 67.6%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 42.0 2.64e-01 95.6% 15.9%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 4.04e-01 100.0% 89.8%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.51 40.0 3.83e-01 97.8% 98.2%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 42.0 4.17e-01 97.8% 95.7%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 38.0 3.62e-01 93.3% 93.4%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738604 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 3.95e-01 88.9% 32.4%
4970237 101.1.1.371 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.74 59.0 5.94e-01 95.6% 86.7%
4503081 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.71 50.0 4.37e-01 86.7% 48.6%
3642010 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.71 57.0 4.45e-01 88.9% 44.2%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.70 53.0 4.35e-01 88.9% 44.7%
4971941 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.70 53.0 4.51e-01 88.9% 50.7%
3281274 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.69 52.0 4.29e-01 88.9% 46.3%
4020328 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.69 51.0 5.14e-01 93.3% 80.0%
3729223 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.65e-01 88.9% 61.7%
4972274 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.58e-01 88.9% 55.7%
4963579 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.68 52.0 3.77e-01 88.9% 28.9%
3276386 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.41e-01 86.7% 52.9%
5011994 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.68 52.0 3.80e-01 86.7% 30.0%
4966880 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.68 60.0 4.58e-01 95.6% 54.7%
4980926 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 3.94e-01 88.9% 36.2%
3781995 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 4.26e-01 84.4% 55.0%
4989929 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 49.0 4.98e-01 93.3% 80.0%
3942897 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 3.97e-01 88.9% 42.5%
3953573 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.66 52.0 3.70e-01 88.9% 28.3%
None — 0.66 52.0 3.70e-01 88.9% 28.3%
None — 0.66 52.0 3.80e-01 88.9% 31.5%
4224164 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 51.0 4.29e-01 88.9% 48.8%
4473764 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.66 50.0 3.52e-01 88.9% 26.2%
4954772 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 51.0 4.79e-01 88.9% 70.9%
5034431 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.65 51.0 3.68e-01 88.9% 29.3%
3588502 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.65 50.0 4.32e-01 86.7% 52.0%
4928175 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.65 49.0 5.00e-01 88.9% 88.1%
5032601 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 47.0 4.46e-01 88.9% 65.5%
4933412 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 50.0 3.59e-01 88.9% 29.7%
4988046 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.97e-01 88.9% 82.0%
5084071 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 49.0 3.58e-01 86.7% 27.9%
5073679 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 45.0 3.81e-01 88.9% 42.5%
5061230 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.17e-01 88.9% 49.4%
4948833 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.74e-01 88.9% 74.0%
4927119 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.71e-01 95.6% 64.6%
3282102 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 53.0 3.73e-01 95.6% 42.7%
4998812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 48.0 4.34e-01 88.9% 58.5%
4979317 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.64 49.0 4.07e-01 86.7% 45.9%
3943344 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.64 50.0 3.59e-01 88.9% 29.3%
4979789 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.64 44.0 4.19e-01 86.7% 60.0%
4132207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 50.0 3.55e-01 88.9% 29.0%
3287678 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 48.0 4.04e-01 88.9% 47.5%
5049870 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 48.0 4.22e-01 88.9% 54.3%
3590355 604.39.1.5 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt 0.63 51.0 3.45e-01 100.0% 47.8%
4931184 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.63 48.0 4.55e-01 88.9% 69.1%
4969698 101.1.1.544 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.63 51.0 4.40e-01 93.3% 86.7%
4956886 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.63 48.0 3.48e-01 86.7% 27.9%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.63 48.0 4.05e-01 88.9% 50.0%
4962359 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.63 47.0 3.92e-01 88.9% 44.7%
3697050 103.13.1.0 ↗ alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein 0.62 50.0 4.17e-01 86.7% 68.0%
5031372 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.42e-01 86.7% 67.3%
5030083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.64e-01 88.9% 76.0%
4978144 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 47.0 4.31e-01 88.9% 63.3%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 51.0 3.93e-01 97.8% 70.4%
4962267 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 51.0 4.20e-01 97.8% 91.1%
5017632 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.61 48.0 4.34e-01 88.9% 63.1%
4996071 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 50.0 4.14e-01 97.8% 91.1%
5053418 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 51.0 4.17e-01 97.8% 91.1%
4978382 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.61 46.0 4.37e-01 88.9% 69.1%
5079698 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.61 46.0 4.23e-01 88.9% 63.3%
4947168 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 52.0 4.22e-01 100.0% 92.2%
4948850 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.61 45.0 4.62e-01 86.7% 86.0%
3611703 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.61 43.0 3.89e-01 88.9% 53.8%
4991639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.86e-01 88.9% 47.5%
4944102 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 51.0 4.17e-01 100.0% 92.2%
4192837 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 45.0 4.32e-01 88.9% 69.1%
4927812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 46.0 3.98e-01 88.9% 52.0%
5048567 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 46.0 4.12e-01 88.9% 58.5%
4927466 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 51.0 4.17e-01 100.0% 92.2%
3511100 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 45.0 4.32e-01 88.9% 69.1%
5032612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.28e-01 88.9% 69.1%
4929479 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 51.0 4.17e-01 100.0% 92.2%
4937392 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.60 45.0 3.33e-01 88.9% 30.4%
2572 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.60 44.0 4.07e-01 88.9% 60.3%
3924290 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 42.0 4.29e-01 86.7% 75.6%
4985252 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 44.0 3.99e-01 88.9% 58.5%
4040211 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.58 43.0 4.00e-01 86.7% 61.7%
4449179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.00e-01 86.7% 61.7%
5034428 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.58 43.0 4.23e-01 88.9% 76.0%
5011311 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.90e-01 88.9% 56.0%
4318089 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.58 43.0 4.00e-01 86.7% 61.7%
3702175 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 45.0 3.73e-01 86.7% 48.2%
3711450 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 44.0 3.75e-01 88.9% 63.7%
3261508 109.4.1.142 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.56 46.0 3.27e-01 100.0% 29.3%
3896790 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.91e-01 97.8% 61.3%
4957813 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 46.0 4.18e-01 100.0% 73.8%
4968864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.43e-01 95.6% 93.3%
4979401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.18e-01 97.8% 76.4%
4619778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.82e-01 71.1% 85.0%
3259021 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.54 44.0 2.87e-01 93.3% 90.2%
3233890 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 47.0 4.12e-01 100.0% 81.5%