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OP807343.1__WBM89784.1__X__00054

Bact-Vir

OP807343.1__WBM89784.1__X__00054

Identity

Accession:
OP807343 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lacticaseibacillus_phage_P7.1

TaxID: 3016940

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-119
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 45.0 5.13e-01 94.4% 90.2%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.69 56.0 5.47e-01 91.5% 97.4%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 46.0 5.30e-01 93.0% 100.0%
1svmA01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.68 51.0 4.76e-01 81.7% 85.6%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.66 55.0 5.18e-01 95.8% 93.2%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 46.0 4.56e-01 80.3% 98.7%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.61 45.0 4.56e-01 100.0% 78.9%
1w36B04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.61 51.0 4.09e-01 95.8% 89.7%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.58 48.0 4.41e-01 95.8% 93.9%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 48.0 3.66e-01 95.8% 39.2%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.96e-01 81.7% 64.7%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.66e-01 95.8% 92.4%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 38.0 4.30e-01 97.2% 98.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.57 45.0 4.09e-01 87.3% 74.2%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 49.0 4.17e-01 98.6% 85.1%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 49.0 4.17e-01 98.6% 86.8%
5jnmA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 48.0 3.70e-01 100.0% 74.7%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 47.0 4.00e-01 100.0% 85.4%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.53 41.0 3.06e-01 94.4% 30.8%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 39.0 3.86e-01 83.1% 86.4%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.53 32.0 3.51e-01 77.5% 75.0%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.53 42.0 3.14e-01 90.1% 40.8%
1k90B03 1.20.140.60 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.53 41.0 3.59e-01 87.3% 63.5%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.52 39.0 4.00e-01 87.3% 100.0%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.51 44.0 3.77e-01 98.6% 81.0%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 37.0 3.12e-01 80.3% 47.3%
1z3xA02 1.10.10.1770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Gun4-like 0.51 42.0 4.16e-01 95.8% 94.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3640035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 43.0 4.09e-01 100.0% 50.6%
3293154 101.1.2.472 ↗ alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.70 48.0 5.14e-01 84.5% 83.3%
3207944 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 46.0 5.20e-01 98.6% 98.0%
3262 198.1.1.26 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF31278 0.69 56.0 5.47e-01 91.5% 97.4%
3458449 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.66 50.0 4.83e-01 98.6% 71.2%
4375034 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.66 47.0 5.16e-01 97.2% 100.0%
3277060 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.65 54.0 5.31e-01 93.0% 92.0%
5001590 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 46.0 5.11e-01 84.5% 96.4%
4283243 2004.1.1.149 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD 0.64 48.0 3.13e-01 83.1% 65.9%
3255955 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 51.0 4.90e-01 93.0% 90.6%
3807250 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.63 44.0 4.70e-01 83.1% 86.7%
2141639 198.1.1.6 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › Saposin 0.62 53.0 4.60e-01 100.0% 75.4%
3485400 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.13e-01 84.5% 73.3%
5017220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.47e-01 81.7% 83.1%
3839909 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.59 50.0 3.49e-01 97.2% 61.2%
3251428 3919.1.1.4 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N 0.57 51.0 4.42e-01 100.0% 80.9%
4533235 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 2.61e-01 98.6% 14.7%
3741782 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 45.0 3.90e-01 95.8% 61.7%
3739223 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.51 41.0 3.16e-01 88.7% 96.4%
5050625 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.07e-01 81.7% 45.8%