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OP807344.1__WBM89830.1__X__00045

Bact-Vir

OP807344.1__WBM89830.1__X__00045

Identity

Accession:
OP807344 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Junavirus› Lacticaseibacillus_phage_R3.1

TaxID: 3016941

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-66
PDB
Domain cluster: rep: ON464759.1__UTV60862.1__JDFnp1_74__00074__D5-72
Pfam (4)
AccessionNameScoreE-valueQ covHMM cov
PF13560.13 best HTH_31 40.8 3.20e-10 90.5% 85.9%
PF13443.13 HTH_26 32.2 1.40e-07 90.5% 88.9%
PF01381.29 HTH_3 42.1 1.00e-10 87.3% 92.7%
PF13412.13 HTH_24 22.0 1.30e-04 58.7% 66.7%
D2 high residues 81-221
PDB
Domain cluster: rep: MK448705.1__QBX15854.1__Javan215_0051__00005__D138-257
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00717.29 best Peptidase_S24 58.4 7.70e-16 95.0% 98.3%
PF10502.15 Peptidase_S26 25.0 2.40e-05 52.5% 26.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.84 58.0 6.58e-01 77.3% 90.7%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.84 67.0 7.30e-01 95.0% 97.5%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.82 54.0 6.37e-01 72.3% 93.1%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.82 68.0 7.24e-01 98.6% 98.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.80 60.0 6.68e-01 100.0% 96.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 29.0 3.50e-01 85.1% 70.7%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 29.0 3.39e-01 91.5% 66.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.47e-01 93.6% 96.1%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.17e-01 75.2% 93.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.15e-01 75.2% 92.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.88 60.0 5.29e-01 78.0% 50.3%
4607208 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.87 71.0 7.66e-01 100.0% 97.6%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.87 54.0 6.79e-01 70.2% 98.9%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.85 62.0 6.75e-01 100.0% 89.0%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.85 61.0 6.78e-01 100.0% 91.2%
3164339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 77.0 7.47e-01 100.0% 87.7%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.83 76.0 7.55e-01 100.0% 93.7%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.83 75.0 7.68e-01 98.6% 98.5%
3965029 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 74.0 7.45e-01 100.0% 94.3%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 71.0 7.28e-01 100.0% 94.1%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.82 57.0 6.15e-01 90.1% 82.5%
4034335 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 62.0 7.02e-01 93.6% 100.0%
3970039 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.82 76.0 7.69e-01 100.0% 97.9%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.81 71.0 7.25e-01 100.0% 94.8%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 58.0 5.06e-01 77.3% 62.0%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 68.0 6.84e-01 100.0% 98.6%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 53.0 5.43e-01 99.3% 77.8%
4990503 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.71 57.0 6.02e-01 99.3% 92.0%
3266698 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 56.0 5.77e-01 98.6% 87.4%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 37.0 4.69e-01 95.7% 87.1%
5014946 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 55.0 5.71e-01 100.0% 90.0%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 53.0 5.15e-01 83.0% 74.2%
1323508 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 55.0 5.62e-01 86.5% 96.4%
5012425 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 57.0 5.73e-01 98.6% 91.4%
4252291 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.59 56.0 5.13e-01 99.3% 88.9%
None — 0.58 55.0 5.16e-01 99.3% 97.1%
3659149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 35.0 4.01e-01 84.4% 93.3%