←Back to structures

OP807345.1__WBM89858.1__X__00015

Bact-Vir

OP807345.1__WBM89858.1__X__00015

Identity

Accession:
OP807345 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Coetzeevirus› Lacticaseibacillus_phage_R3.3

TaxID: 3016942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-120
PDB
Domain cluster: rep: MN830256.1__QHJ74974.1__X__00016__D16-151
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10651.16 best BppU_N 58.2 1.10e-15 99.2% 77.1%
D2 high residues 163-317
PDB
D3 high residues 349-474
PDB
D4 high residues 507-639
PDB
D5 medium residues 655-810
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5af7B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.57 25.0 2.85e-01 98.1% 50.9%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 26.0 3.38e-01 81.4% 89.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1838840 206.1.1.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › CotH 0.84 72.0 5.26e-01 99.4% 38.3%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 35.0 3.52e-01 89.7% 67.5%
3960667 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 34.0 3.67e-01 91.7% 79.3%
D6 medium residues 811-992
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08757.18 best CotH 49.5 6.50e-13 85.7% 36.6%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.52 20.0 3.25e-01 70.3% 100.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1838840 206.1.1.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › CotH 0.81 73.0 5.65e-01 100.0% 47.2%
4949295 206.1.1.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › CotH 0.77 73.0 5.55e-01 100.0% 47.9%
1291888 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.67 43.0 3.45e-01 96.7% 33.1%
4145813 206.1.1.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › CotH 0.60 57.0 4.67e-01 100.0% 64.3%
4575494 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.53 47.0 3.60e-01 98.9% 89.6%
3739543 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.53 49.0 3.66e-01 100.0% 65.9%
3283217 206.1.1.24 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C,Couple_hipA 0.53 43.0 3.51e-01 86.8% 88.4%
3715719 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.52 49.0 3.76e-01 100.0% 53.8%
3600656 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 49.0 3.79e-01 100.0% 55.7%
4958568 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.52 37.0 3.23e-01 72.5% 52.4%
3544317 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.52 49.0 3.77e-01 100.0% 50.5%
3948108 206.1.1.24 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C,Couple_hipA 0.52 47.0 3.54e-01 98.4% 89.3%
4630278 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.52 15.0 2.40e-01 79.7% 61.4%
3646763 206.1.1.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.50 47.0 3.52e-01 100.0% 60.0%
D7 medium residues 993-1051
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c1aA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.26e-01 88.1% 40.7%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.58e-01 91.5% 44.4%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.52 41.0 3.67e-01 89.8% 67.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032198 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 33.0 3.43e-01 88.1% 65.5%
3659116 212.1.1.48 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › PF28653 0.50 41.0 2.75e-01 91.5% 22.4%