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OP810509.1__WAK43911.1__IAPFLPAM_00051__00051
Bact-VirOP810509.1__WAK43911.1__IAPFLPAM_00051__00051
Identity
- Accession:
- OP810509 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-79_158-192
Domain cluster:
rep: NC_010393.1__YP_001700681.1__STM1036.Gifsy2__00038__D6-86_149-187
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 55.0 | 4.59e-01 | 82.7% | 46.1% |
| 1in0A02 | 3.30.70.990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 | 0.68 | 43.0 | 4.54e-01 | 88.5% | 71.7% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 36.0 | 4.19e-01 | 75.0% | 74.0% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.65 | 44.0 | 4.71e-01 | 81.7% | 81.8% |
| 1ii5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 47.0 | 4.38e-01 | 76.9% | 90.6% |
| 2dyjA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.63 | 44.0 | 4.68e-01 | 77.9% | 83.5% |
| 4gc8B00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.61 | 49.0 | 4.10e-01 | 84.6% | 100.0% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.99e-01 | 92.3% | 81.2% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 34.0 | 3.89e-01 | 71.2% | 76.1% |
| 3i3wA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.60 | 39.0 | 4.31e-01 | 73.1% | 87.0% |
| 3mpkA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 43.0 | 3.96e-01 | 76.0% | 82.1% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 36.0 | 3.95e-01 | 70.2% | 73.8% |
| 2mzwA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.59 | 34.0 | 3.82e-01 | 80.8% | 75.0% |
| 4i62A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 46.0 | 4.17e-01 | 84.6% | 88.2% |
| 4wxjB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 45.0 | 4.07e-01 | 83.7% | 93.2% |
| 5wjpA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 42.0 | 3.82e-01 | 76.9% | 83.1% |
| 3m3kA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 42.0 | 3.83e-01 | 81.7% | 93.2% |
| 2cfqA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 43.0 | 3.43e-01 | 81.7% | 81.1% |
| 3delB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.91e-01 | 82.7% | 86.3% |
| 5zi2A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 42.0 | 3.51e-01 | 82.7% | 49.5% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.55 | 38.0 | 3.09e-01 | 72.1% | 78.5% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 42.0 | 3.57e-01 | 80.8% | 60.5% |
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 47.0 | 3.48e-01 | 96.2% | 37.9% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.84e-01 | 84.6% | 78.7% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.54 | 40.0 | 3.49e-01 | 77.9% | 51.6% |
| 1jgsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.86e-01 | 88.5% | 86.2% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 26.0 | 3.17e-01 | 90.4% | 78.0% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 35.0 | 3.70e-01 | 87.5% | 78.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3648554 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.73 | 50.0 | 5.12e-01 | 84.6% | 73.0% |
| 4029765 | 3755.1.1.15 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › RIFIN | 0.71 | 63.0 | 5.04e-01 | 97.1% | 72.5% |
| 3407163 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.70 | 51.0 | 4.89e-01 | 89.4% | 66.4% |
| 3235811 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.66 | 54.0 | 4.55e-01 | 87.5% | 86.9% |
| 3742389 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.65 | 42.0 | 4.66e-01 | 85.6% | 85.0% |
| 4502232 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.63 | 42.0 | 4.63e-01 | 80.8% | 87.5% |
| 5013852 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.62 | 42.0 | 4.55e-01 | 92.3% | 84.7% |
| 3372442 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.61 | 43.0 | 3.10e-01 | 72.1% | 79.0% |
| 3539123 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.60 | 48.0 | 3.59e-01 | 87.5% | 88.7% |
| 3514595 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.60 | 35.0 | 3.91e-01 | 78.8% | 77.3% |
| 3929962 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.59 | 51.0 | 3.81e-01 | 94.2% | 82.4% |
| 3242142 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.59 | 35.0 | 3.76e-01 | 72.1% | 69.4% |
| 3489670 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.57 | 49.0 | 3.85e-01 | 96.2% | 52.2% |
| 3268288 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.56 | 47.0 | 3.46e-01 | 91.3% | 87.7% |
| 3886612 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 40.0 | 2.92e-01 | 94.2% | 27.7% |
| 3530542 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 44.0 | 3.15e-01 | 87.5% | 62.1% |
| 3025534 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.54 | 47.0 | 3.93e-01 | 100.0% | 69.6% |
| 2755218 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 41.0 | 3.29e-01 | 80.8% | 58.3% |
| 3611729 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.54 | 33.0 | 3.17e-01 | 82.7% | 50.0% |
| 4003098 | 5050.1.1.73 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1, MFS_1_like | 0.53 | 43.0 | 2.83e-01 | 88.5% | 36.3% |
| 3957035 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.53 | 48.0 | 3.65e-01 | 100.0% | 93.6% |
| 3713814 | 306.10.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 | 0.53 | 44.0 | 4.26e-01 | 92.3% | 82.6% |
| 3388401 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.53 | 40.0 | 3.63e-01 | 80.8% | 86.2% |
| 3664519 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.53 | 46.0 | 2.95e-01 | 93.3% | 61.9% |
| 3942067 | 4120.1.1.44 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TraD_N | 0.52 | 44.0 | 4.36e-01 | 93.3% | 95.5% |
| 3435446 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.51 | 33.0 | 3.58e-01 | 71.2% | 78.8% |
| 3718200 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 38.0 | 3.53e-01 | 97.1% | 64.0% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.51 | 41.0 | 3.22e-01 | 86.5% | 74.2% |
D2
high
residues 81-156
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 41.0 | 3.65e-01 | 76.3% | 71.9% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 40.0 | 3.63e-01 | 77.6% | 66.7% |
| 1xovA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 34.0 | 3.53e-01 | 89.5% | 68.1% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.53 | 42.0 | 3.08e-01 | 89.5% | 88.6% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 31.0 | 3.52e-01 | 98.7% | 83.6% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 31.0 | 3.36e-01 | 76.3% | 75.4% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 30.0 | 3.26e-01 | 75.0% | 69.4% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.51 | 34.0 | 3.37e-01 | 100.0% | 62.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950522 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.61 | 35.0 | 3.96e-01 | 75.0% | 76.4% |
| 4142364 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 31.0 | 3.38e-01 | 100.0% | 64.6% |
| 3955873 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.53 | 38.0 | 3.91e-01 | 75.0% | 85.7% |
| 3502695 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.52 | 29.0 | 3.44e-01 | 80.3% | 82.0% |
| 167222 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.52 | 28.0 | 3.06e-01 | 78.9% | 62.3% |
| 3523340 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.51 | 30.0 | 3.62e-01 | 85.5% | 97.8% |
| 4032337 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.51 | 44.0 | 3.52e-01 | 100.0% | 47.3% |
| 3422227 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.51 | 38.0 | 2.56e-01 | 81.6% | 59.4% |