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OP830906.1__WBF78055.1__MEP401_gp02__00002

Bact-Vir

OP830906.1__WBF78055.1__MEP401_gp02__00002

Identity

Accession:
OP830906 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Methylophilales_phage_MEP401

TaxID: 3003800

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.59 39.0 2.26e-01 90.6% 6.9%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.59 34.0 3.97e-01 98.1% 78.9%
3fdjA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.57 34.0 3.81e-01 98.1% 78.9%
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 35.0 2.68e-01 94.3% 25.2%
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.54 35.0 3.83e-01 100.0% 81.4%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 42.0 3.30e-01 90.6% 63.6%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.53 33.0 2.79e-01 96.2% 33.0%
3mamA02 3.40.190.120 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Osmoprotection protein (prox); domain 2 0.52 39.0 3.35e-01 90.6% 70.2%
7c2gG01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 45.0 3.78e-01 96.2% 68.2%
1nt2B01 3.30.2150.10 Alpha Beta › 2-Layer Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › Fibrillarin homologue 0.51 43.0 3.96e-01 98.1% 87.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934443 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.69 53.0 3.87e-01 83.0% 31.4%
4953240 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.65 45.0 3.36e-01 75.5% 28.9%
3733257 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.60 31.0 2.95e-01 83.0% 41.5%
3698054 2.1.1.72 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC 0.58 46.0 3.35e-01 92.5% 91.4%
3819271 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.58 31.0 2.93e-01 84.9% 43.1%
3594629 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.57 43.0 2.96e-01 88.7% 38.7%
3914216 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.57 39.0 2.46e-01 73.6% 15.0%
3235070 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.55 42.0 2.77e-01 88.7% 81.5%
3924201 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.53 31.0 2.94e-01 84.9% 48.4%
3704054 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.53 39.0 2.72e-01 88.7% 37.9%
3939966 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 40.0 3.27e-01 92.5% 72.7%