Back to structures

OP830906.1__WBF78057.1__MEP401_gp04__00004

Bact-Vir

OP830906.1__WBF78057.1__MEP401_gp04__00004

Identity

Accession:
OP830906 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.76 54.0 4.67e-01 75.0% 54.5%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.76 54.0 3.23e-01 75.0% 12.6%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 65.0 4.57e-01 100.0% 60.6%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 50.0 2.98e-01 76.9% 10.1%
2qdsA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.73 63.0 4.13e-01 100.0% 24.1%
2rauA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.72 61.0 3.76e-01 100.0% 39.1%
1w2mA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.69 51.0 3.25e-01 78.8% 41.4%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 48.0 2.89e-01 75.0% 10.9%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.69 46.0 4.79e-01 73.1% 77.1%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.67 47.0 2.81e-01 75.0% 11.3%
6n10A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.66 50.0 3.43e-01 86.5% 63.1%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.66 53.0 3.48e-01 94.2% 38.8%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 44.0 2.85e-01 75.0% 47.5%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.63 50.0 4.31e-01 90.4% 60.9%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 44.0 3.17e-01 76.9% 34.6%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 44.0 3.94e-01 75.0% 93.3%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 48.0 3.92e-01 88.5% 88.6%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.26e-01 75.0% 84.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 54.0 3.35e-01 100.0% 90.2%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 43.0 3.61e-01 75.0% 95.7%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 43.0 3.48e-01 75.0% 84.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.61 50.0 4.51e-01 98.1% 78.2%
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.61 43.0 3.48e-01 75.0% 84.3%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 41.0 2.89e-01 73.1% 92.8%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 39.0 3.53e-01 100.0% 48.6%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 47.0 3.90e-01 92.3% 71.0%
3kbqB00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.58 45.0 3.30e-01 92.3% 42.6%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 41.0 2.82e-01 75.0% 30.7%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 3.88e-01 92.3% 65.4%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 2.73e-01 73.1% 97.0%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.52e-01 86.5% 62.8%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.57 48.0 3.79e-01 96.2% 67.0%
3rpfA00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.56 44.0 3.29e-01 90.4% 76.6%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 3.69e-01 92.3% 68.3%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 3.47e-01 92.3% 43.7%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 3.39e-01 82.7% 51.0%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.54 36.0 2.83e-01 100.0% 30.8%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 37.0 2.98e-01 75.0% 36.0%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 40.0 2.80e-01 90.4% 90.0%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.03e-01 100.0% 54.8%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.53 39.0 3.13e-01 86.5% 39.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.50e-01 88.5% 62.3%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.67e-01 75.0% 87.5%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.52 37.0 3.26e-01 75.0% 88.9%
4bubA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.70e-01 90.4% 93.0%
1celA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.52 42.0 2.54e-01 100.0% 71.1%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 38.0 2.68e-01 90.4% 85.6%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 2.61e-01 96.2% 64.6%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 2.82e-01 86.5% 44.2%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.51 34.0 3.15e-01 71.2% 57.5%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 40.0 2.53e-01 90.4% 90.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4618792 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.83 58.0 3.34e-01 75.0% 8.8%
4332532 5.1.4.309 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 0.76 54.0 3.12e-01 75.0% 9.9%
3166135 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.75 53.0 4.32e-01 75.0% 42.1%
4943724 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 51.0 3.08e-01 73.1% 13.1%
3595887 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 53.0 3.06e-01 76.9% 11.9%
3284924 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.71 47.0 2.93e-01 75.0% 12.7%
2793268 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.71 61.0 3.96e-01 100.0% 21.5%
3597443 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.70 60.0 4.38e-01 100.0% 87.3%
4943887 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.70 60.0 3.81e-01 100.0% 20.0%
4437811 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 40.0 2.82e-01 100.0% 20.7%
3295376 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.67 43.0 5.04e-01 75.0% 100.0%
4929480 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.66 55.0 3.91e-01 92.3% 37.4%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 46.0 3.12e-01 73.1% 21.1%
4956661 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.66 55.0 3.97e-01 92.3% 35.9%
3933654 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 42.0 4.46e-01 73.1% 75.6%
4528718 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 54.0 3.59e-01 92.3% 43.9%
4029094 3257.1.1.0 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.65 56.0 3.78e-01 100.0% 52.5%
4960279 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.64 44.0 4.48e-01 76.9% 76.0%
3681410 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 42.0 3.48e-01 100.0% 37.9%
3498911 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 52.0 4.37e-01 98.1% 64.3%
3762791 913.1.1.9 few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › PF27521 0.63 43.0 4.58e-01 73.1% 95.6%
3984011 206.1.1.33 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › OspG_kinase 0.63 44.0 3.09e-01 75.0% 40.0%
3246591 2492.1.1.8 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.63 43.0 2.99e-01 73.1% 62.6%
3208329 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 50.0 4.26e-01 92.3% 75.6%
3286115 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 50.0 4.10e-01 100.0% 61.7%
4929884 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 50.0 3.40e-01 96.2% 23.3%
3724380 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 50.0 4.24e-01 100.0% 75.8%
4215371 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 46.0 3.83e-01 82.7% 74.4%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.60 49.0 4.47e-01 92.3% 80.0%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.58 37.0 3.43e-01 100.0% 48.6%
3635675 2008.1.1.144 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 0.58 44.0 3.05e-01 86.5% 73.2%
4945895 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 50.0 4.03e-01 100.0% 58.1%
4996765 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.58 46.0 3.08e-01 96.2% 20.1%
3256386 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.58 40.0 3.07e-01 75.0% 87.4%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 48.0 4.43e-01 98.1% 90.0%
4569026 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 47.0 3.47e-01 100.0% 87.5%
4990115 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.57 46.0 3.81e-01 86.5% 73.3%
3385764 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.57 47.0 4.16e-01 90.4% 86.7%
4804226 9.1.1.11 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.57 41.0 3.94e-01 86.5% 70.6%
4822969 3618.1.1.0 beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain 0.56 38.0 3.52e-01 71.2% 54.3%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 3.96e-01 80.8% 78.3%
3935730 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.55 41.0 3.59e-01 84.6% 57.8%
4457771 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 38.0 3.38e-01 75.0% 49.3%
4120366 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 36.0 3.63e-01 100.0% 67.3%
3376270 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.54 42.0 3.83e-01 88.5% 88.0%
4954529 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.54 37.0 3.63e-01 75.0% 65.0%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 46.0 4.01e-01 96.2% 83.7%
3194888 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.53 45.0 3.23e-01 98.1% 48.8%
5826 330.5.1.2 a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein › Phage_ABA_S 0.53 39.0 3.13e-01 86.5% 39.8%
5017478 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 37.0 3.20e-01 86.5% 47.1%
4251276 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 39.0 2.62e-01 90.4% 86.3%
5055937 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 39.0 2.56e-01 90.4% 82.9%
4056032 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 39.0 2.69e-01 90.4% 87.3%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.37e-01 73.1% 70.0%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.06e-01 84.6% 40.0%