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OP830906.1__WBF78062.1__MEP401_gp09__00009
Bact-VirOP830906.1__WBF78062.1__MEP401_gp09__00009
Identity
- Accession:
- OP830906 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
TaxID: 3003800
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-44
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6muwB00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.73 | 49.0 | 3.10e-01 | 71.4% | 56.8% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 40.0 | 2.66e-01 | 90.5% | 14.5% |
| 3zlaD01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.70 | 40.0 | 2.77e-01 | 85.7% | 19.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 46.0 | 3.33e-01 | 100.0% | 26.6% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.67 | 48.0 | 3.30e-01 | 78.6% | 88.5% |
| 5wzoA00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.67 | 40.0 | 2.89e-01 | 100.0% | 21.1% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 43.0 | 3.22e-01 | 100.0% | 27.4% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 3.96e-01 | 76.2% | 90.1% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 45.0 | 3.37e-01 | 73.8% | 35.4% |
| 3v0aB02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.64 | 50.0 | 3.07e-01 | 100.0% | 58.3% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 45.0 | 2.95e-01 | 78.6% | 35.0% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.64 | 44.0 | 3.29e-01 | 76.2% | 38.1% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.63 | 47.0 | 3.32e-01 | 83.3% | 25.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.63 | 42.0 | 2.86e-01 | 100.0% | 19.7% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.63 | 51.0 | 3.36e-01 | 92.9% | 55.5% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.62 | 39.0 | 2.98e-01 | 90.5% | 27.4% |
| 2h21B01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.62 | 42.0 | 2.55e-01 | 100.0% | 11.8% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 3.61e-01 | 78.6% | 84.0% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.59 | 37.0 | 2.81e-01 | 95.2% | 24.0% |
| 3njfA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 39.0 | 3.01e-01 | 85.7% | 27.7% |
| 1j8bA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.57 | 44.0 | 3.68e-01 | 100.0% | 45.7% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 43.0 | 2.54e-01 | 81.0% | 13.2% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.56 | 47.0 | 2.97e-01 | 95.2% | 31.8% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.56 | 41.0 | 2.74e-01 | 78.6% | 19.3% |
| 4eq8A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 38.0 | 2.66e-01 | 71.4% | 67.7% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 2.48e-01 | 78.6% | 18.3% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 40.0 | 2.41e-01 | 85.7% | 40.4% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.53 | 37.0 | 2.94e-01 | 95.2% | 70.1% |
| 1f5aA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 38.0 | 2.83e-01 | 97.6% | 80.1% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.52 | 38.0 | 2.34e-01 | 88.1% | 50.8% |
| 7kw0A02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 39.0 | 2.80e-01 | 90.5% | 25.8% |
| 6g0nA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 43.0 | 2.51e-01 | 95.2% | 25.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 38.0 | 2.96e-01 | 85.7% | 39.4% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.51 | 37.0 | 2.60e-01 | 95.2% | 32.4% |
| 4kkiA02 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.50 | 33.0 | 2.67e-01 | 71.4% | 40.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279914 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.75 | 42.0 | 2.74e-01 | 90.5% | 13.9% |
| 3288571 | 2484.2.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N | 0.72 | 50.0 | 3.92e-01 | 76.2% | 34.7% |
| 5012120 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.71 | 40.0 | 2.85e-01 | 95.2% | 20.0% |
| 3962103 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.70 | 57.0 | 4.44e-01 | 100.0% | 40.0% |
| 3230598 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.69 | 47.0 | 3.28e-01 | 73.8% | 30.0% |
| 5046198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 46.0 | 4.27e-01 | 73.8% | 52.7% |
| 3930845 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 40.0 | 3.38e-01 | 97.6% | 35.7% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.67 | 44.0 | 2.96e-01 | 100.0% | 18.1% |
| 5046979 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 39.0 | 2.86e-01 | 88.1% | 22.7% |
| 4203006 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.66 | 47.0 | 3.46e-01 | 76.2% | 76.4% |
| 4197141 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.65 | 55.0 | 4.28e-01 | 100.0% | 43.0% |
| 3237008 | 2484.1.1.233 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 | 0.65 | 47.0 | 3.05e-01 | 78.6% | 19.0% |
| 4316087 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.64 | 44.0 | 3.24e-01 | 73.8% | 70.0% |
| 4498285 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.60 | 49.0 | 3.93e-01 | 100.0% | 45.3% |
| 4168230 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.59 | 48.0 | 3.90e-01 | 100.0% | 45.3% |
| 3607693 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 48.0 | 2.85e-01 | 92.9% | 40.7% |
| 3928377 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.58 | 41.0 | 2.69e-01 | 73.8% | 17.5% |
| 3968312 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.57 | 39.0 | 2.96e-01 | 73.8% | 29.6% |
| 4047302 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.57 | 45.0 | 3.63e-01 | 100.0% | 43.0% |
| 3957133 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.56 | 42.0 | 2.64e-01 | 81.0% | 21.0% |
| 3507442 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.55 | 41.0 | 2.48e-01 | 81.0% | 15.7% |
| 4369844 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.53 | 36.0 | 2.58e-01 | 73.8% | 22.6% |
| 4990736 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.53 | 36.0 | 2.58e-01 | 76.2% | 47.5% |
| 3618206 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.52 | 43.0 | 2.76e-01 | 90.5% | 42.6% |
| 4960428 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 36.0 | 2.35e-01 | 78.6% | 23.2% |
| 3710982 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.51 | 42.0 | 2.54e-01 | 90.5% | 16.4% |
| 3502095 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.51 | 43.0 | 2.85e-01 | 95.2% | 46.1% |
| 3168940 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.51 | 36.0 | 2.19e-01 | 90.5% | 10.3% |
| 1273564 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.50 | 35.0 | 2.63e-01 | 85.7% | 41.0% |
| 3931356 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.50 | 40.0 | 2.76e-01 | 97.6% | 49.7% |