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OP867012.1__WAX22043.1__spd_00011__00011

Bact-Vir

OP867012.1__WAX22043.1__spd_00011__00011

Identity

Accession:
OP867012 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Loebvirae› Hofneiviricota› Faserviricetes› Tubulavirales› Inoviridae› Shewanella_phage_Dolos

TaxID: 3003240

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-66
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.65 46.0 3.80e-01 75.0% 69.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 40.0 3.66e-01 71.2% 52.1%
3cmnA01 1.20.150.30 Mainly Alpha › Up-down Bundle › Lysin › Zincin-like metallopeptidase, N-terminal domain 0.56 41.0 3.18e-01 78.8% 65.8%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 43.0 3.41e-01 90.4% 40.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3883414 101.1.1.228 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 0.80 64.0 5.88e-01 98.1% 67.7%
5049129 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 54.0 4.72e-01 73.1% 52.0%
4945590 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.73 56.0 5.55e-01 86.5% 80.0%
3472659 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.65 45.0 3.34e-01 73.1% 77.1%
4961037 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 43.0 4.29e-01 75.0% 70.9%